Variant report

Variant	rs6852939
Chromosome Location	chr4:147064653-147064654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000860	0.93[EUR][1000 genomes]
rs10000861	0.93[EUR][1000 genomes]
rs10000865	0.93[EUR][1000 genomes]
rs10010356	0.81[EUR][1000 genomes]
rs10013229	0.93[EUR][1000 genomes]
rs10015161	0.93[EUR][1000 genomes]
rs10021707	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10028478	0.93[EUR][1000 genomes]
rs10029288	0.93[EUR][1000 genomes]
rs10029293	0.81[EUR][1000 genomes]
rs10031419	0.93[EUR][1000 genomes]
rs10519778	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11931059	1.00[CEU][hapmap]
rs11932480	0.93[EUR][1000 genomes]
rs11936772	0.93[EUR][1000 genomes]
rs11946104	0.93[EUR][1000 genomes]
rs13435847	0.93[EUR][1000 genomes]
rs13435855	0.93[EUR][1000 genomes]
rs17021122	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021126	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021129	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021149	0.93[EUR][1000 genomes]
rs17021150	0.93[EUR][1000 genomes]
rs17021152	0.93[EUR][1000 genomes]
rs17021155	1.00[EUR][1000 genomes]
rs17021253	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2082096	1.00[EUR][1000 genomes]
rs2115788	0.93[EUR][1000 genomes]
rs28438609	0.86[EUR][1000 genomes]
rs28440804	1.00[EUR][1000 genomes]
rs28495089	0.93[EUR][1000 genomes]
rs28535638	0.93[EUR][1000 genomes]
rs28602879	0.93[EUR][1000 genomes]
rs28772704	0.93[EUR][1000 genomes]
rs28794473	0.93[EUR][1000 genomes]
rs28862630	0.93[EUR][1000 genomes]
rs60125851	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821054	1.00[EUR][1000 genomes]
rs6824434	1.00[EUR][1000 genomes]
rs6841212	1.00[EUR][1000 genomes]
rs6841228	1.00[EUR][1000 genomes]
rs6841426	1.00[EUR][1000 genomes]
rs6846309	1.00[EUR][1000 genomes]
rs7356451	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7356484	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7655300	0.93[EUR][1000 genomes]
rs7663853	0.93[EUR][1000 genomes]
rs7671076	0.93[EUR][1000 genomes]
rs7680354	0.93[EUR][1000 genomes]
rs7681269	0.93[EUR][1000 genomes]
rs7681704	0.93[EUR][1000 genomes]
rs7691151	0.93[EUR][1000 genomes]
rs7693341	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7698706	0.93[EUR][1000 genomes]
rs867775	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs883857	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9284682	0.85[EUR][1000 genomes]
rs9308197	0.93[EUR][1000 genomes]
rs9308198	0.93[EUR][1000 genomes]
rs9884598	0.93[EUR][1000 genomes]
rs9992451	0.86[EUR][1000 genomes]
rs9997106	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461674	chr4:147047072-147143572	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595650	chr4:147047072-147143572	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1018859	chr4:147055618-147138397	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147063600-147065400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:147063800-147065600	Enhancers	HMEC	breast
3	chr4:147064000-147065800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:147064400-147064800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:147064400-147065600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:147064600-147065400	Weak transcription	NHEK	skin

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