Variant report

Variant	rs28439019
Chromosome Location	chr14:104415350-104415351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10129730	0.84[AMR][1000 genomes]
rs10130042	1.00[ASN][1000 genomes]
rs10131031	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137517	0.82[ASN][1000 genomes]
rs10137676	1.00[ASN][1000 genomes]
rs10137889	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10139210	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10140436	0.89[ASN][1000 genomes]
rs10141374	1.00[ASN][1000 genomes]
rs10142365	0.84[AMR][1000 genomes]
rs10142956	1.00[ASN][1000 genomes]
rs10149898	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10151165	1.00[ASN][1000 genomes]
rs12436665	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17101932	1.00[EUR][1000 genomes]
rs1951580	1.00[EUR][1000 genomes]
rs1951587	1.00[EUR][1000 genomes]
rs2295662	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368996	0.89[ASN][1000 genomes]
rs28407129	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28416628	1.00[ASN][1000 genomes]
rs28432266	0.83[EUR][1000 genomes]
rs28514602	1.00[ASN][1000 genomes]
rs28555097	1.00[ASN][1000 genomes]
rs28563863	0.84[AMR][1000 genomes]
rs28593161	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28715405	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45471291	1.00[EUR][1000 genomes]
rs45540638	1.00[EUR][1000 genomes]
rs4900603	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4900606	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906388	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906393	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906394	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906400	1.00[ASN][1000 genomes]
rs4906403	1.00[ASN][1000 genomes]
rs4906407	0.89[ASN][1000 genomes]
rs4906412	1.00[ASN][1000 genomes]
rs4906414	1.00[ASN][1000 genomes]
rs55746000	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55866217	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56050561	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56279366	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56872578	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57047619	1.00[EUR][1000 genomes]
rs57711557	1.00[EUR][1000 genomes]
rs58071582	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58128911	0.89[ASN][1000 genomes]
rs58220415	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58557120	1.00[EUR][1000 genomes]
rs59838226	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59945383	1.00[EUR][1000 genomes]
rs60080575	0.86[EUR][1000 genomes]
rs60532123	1.00[EUR][1000 genomes]
rs61451840	1.00[EUR][1000 genomes]
rs6576015	0.86[EUR][1000 genomes]
rs7144445	1.00[EUR][1000 genomes]
rs7150795	1.00[ASN][1000 genomes]
rs7156752	1.00[EUR][1000 genomes]
rs7157034	0.86[EUR][1000 genomes]
rs7158035	0.86[EUR][1000 genomes]
rs74086761	0.84[AMR][1000 genomes]
rs74086762	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086783	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74086977	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74089114	0.86[EUR][1000 genomes]
rs8004485	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8007491	1.00[ASN][1000 genomes]
rs8020110	0.82[AMR][1000 genomes]
rs8020476	0.86[EUR][1000 genomes]
rs8021647	0.86[EUR][1000 genomes]
rs8022184	0.86[EUR][1000 genomes]
rs9324070	1.00[ASN][1000 genomes]
rs9671924	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
5	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv902324	chr14:104399640-104464809	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104414800-104417600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr14:104415000-104417400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:104415200-104416400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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