Variant report

Variant	rs7144445
Chromosome Location	chr14:104373006-104373007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104348661..104350567-chr14:104371429..104374100,2	MCF-7	breast:
2	chr14:104370970..104374376-chr14:104374591..104379019,6	K562	blood:
3	chr14:104311389..104314895-chr14:104371036..104373822,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD9-1	chr14:104372498-104373196	NONHSAT040229

Variant related genes	Relation type
ENSG00000088808	Chromatin interaction
ENSG00000258735	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131031	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10131231	1.00[EUR][1000 genomes]
rs17101932	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951580	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1951587	1.00[EUR][1000 genomes]
rs2295662	1.00[EUR][1000 genomes]
rs28407129	1.00[EUR][1000 genomes]
rs28432266	0.83[EUR][1000 genomes]
rs28439019	1.00[EUR][1000 genomes]
rs45471291	1.00[EUR][1000 genomes]
rs45540638	1.00[EUR][1000 genomes]
rs4900603	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57047619	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57711557	1.00[EUR][1000 genomes]
rs58071582	1.00[EUR][1000 genomes]
rs58557120	1.00[EUR][1000 genomes]
rs59945383	1.00[EUR][1000 genomes]
rs60080575	0.86[EUR][1000 genomes]
rs60532123	1.00[EUR][1000 genomes]
rs61451840	1.00[EUR][1000 genomes]
rs6576015	0.86[EUR][1000 genomes]
rs7156752	1.00[EUR][1000 genomes]
rs7157034	0.86[EUR][1000 genomes]
rs7158035	0.86[EUR][1000 genomes]
rs74086762	1.00[EUR][1000 genomes]
rs74089114	0.86[EUR][1000 genomes]
rs8020476	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8021647	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8022184	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
8	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv542206	chr14:104326137-104377507	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1042792	chr14:104326137-104384260	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv542207	chr14:104326137-104384260	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104363200-104376400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:104363200-104387000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:104363600-104375800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:104364800-104375800	Weak transcription	Right Ventricle	heart
5	chr14:104365000-104377400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:104365400-104375800	Weak transcription	Gastric	stomach
7	chr14:104366200-104376400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:104366400-104375800	Weak transcription	Spleen	Spleen
9	chr14:104366600-104377400	Weak transcription	Esophagus	oesophagus
10	chr14:104367600-104376400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:104367600-104376600	Weak transcription	NHLF	lung
12	chr14:104367800-104374600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:104367800-104374600	Weak transcription	Fetal Intestine Small	intestine
14	chr14:104367800-104375800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:104367800-104375800	Weak transcription	Dnd41	blood
16	chr14:104367800-104376000	Weak transcription	Liver	Liver
17	chr14:104367800-104376200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:104367800-104376200	Weak transcription	Fetal Thymus	thymus
19	chr14:104367800-104376200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:104367800-104376400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:104367800-104376400	Weak transcription	Adipose Nuclei	Adipose
22	chr14:104367800-104376400	Weak transcription	Colonic Mucosa	Colon
23	chr14:104367800-104376400	Weak transcription	Placenta	Placenta
24	chr14:104367800-104376400	Weak transcription	Lung	lung
25	chr14:104367800-104376600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:104367800-104378000	Weak transcription	K562	blood
27	chr14:104368800-104376400	Weak transcription	Fetal Stomach	stomach
28	chr14:104370000-104378600	Weak transcription	Aorta	Aorta
29	chr14:104371000-104376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:104371200-104376400	Weak transcription	HUVEC	blood vessel
31	chr14:104372200-104373200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr14:104372200-104376400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:104372400-104374800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr14:104372400-104376400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr14:104372400-104377600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr14:104372600-104374600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:104372600-104374800	Weak transcription	Primary T cells from cord blood	blood
38	chr14:104372600-104374800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:104372600-104374800	Weak transcription	HepG2	liver
40	chr14:104372600-104376000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:104372600-104376000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr14:104372600-104376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:104372600-104376200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:104372600-104376200	Weak transcription	Fetal Lung	lung
45	chr14:104372600-104376400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr14:104372800-104373200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:104372800-104374600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:104372800-104375200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:104372800-104375800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr14:104372800-104376200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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