Variant report

Variant	rs58557120
Chromosome Location	chr14:104436520-104436521
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:104436322-104436600	MCF-7	breast:	n/a	n/a
2	POLR2A	chr14:104436308-104436675	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104312474..104314028-chr14:104433639..104437208,3	MCF-7	breast:

Variant related genes	Relation type
TDRD9	TF binding region
ENSG00000088808	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10131031	1.00[EUR][1000 genomes]
rs10131231	1.00[EUR][1000 genomes]
rs17101932	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951580	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951587	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2295662	1.00[EUR][1000 genomes]
rs28407129	1.00[EUR][1000 genomes]
rs28432266	0.83[EUR][1000 genomes]
rs28439019	1.00[EUR][1000 genomes]
rs35463712	0.81[AFR][1000 genomes]
rs45471291	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45540638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4900603	1.00[EUR][1000 genomes]
rs57047619	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57050909	0.81[AFR][1000 genomes]
rs57711557	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57827261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58071582	1.00[EUR][1000 genomes]
rs59945383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080575	0.86[EUR][1000 genomes]
rs60532123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61451840	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6576015	0.86[EUR][1000 genomes]
rs7144445	1.00[EUR][1000 genomes]
rs7156752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7157034	0.86[EUR][1000 genomes]
rs7158035	0.86[EUR][1000 genomes]
rs74086762	1.00[EUR][1000 genomes]
rs74089114	0.86[EUR][1000 genomes]
rs8020476	0.86[EUR][1000 genomes]
rs8021647	0.86[EUR][1000 genomes]
rs8022184	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
5	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv902324	chr14:104399640-104464809	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv526680	chr14:104427043-104568472	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104417600-104447800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr14:104423200-104445600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr14:104427200-104446000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:104431000-104439600	Weak transcription	Fetal Heart	heart
5	chr14:104435800-104439600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:104436200-104436600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:104436400-104436800	Enhancers	Left Ventricle	heart
8	chr14:104436400-104436800	Enhancers	Pancreas	Pancrea
9	chr14:104436400-104439200	Strong transcription	Monocytes-CD14+_RO01746	blood

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