Variant report

Variant	rs28439027
Chromosome Location	chr15:79135478-79135479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79132097..79136188-chr15:79137055..79140077,3	K562	blood:
2	chr15:79135320..79138414-chr15:79142742..79145472,3	K562	blood:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11072810	0.82[AFR][1000 genomes]
rs11072811	0.81[AFR][1000 genomes]
rs11636545	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11856903	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12595538	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4341710	1.00[EUR][1000 genomes]
rs4401016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4533253	1.00[EUR][1000 genomes]
rs4608303	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495341	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495346	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7164529	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7166501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7166723	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7173955	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7175271	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7180375	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7181033	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7402877	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7403393	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7403438	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7403442	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs8027870	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8028410	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8029173	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs8035783	1.00[EUR][1000 genomes]
rs8037017	0.99[EUR][1000 genomes]
rs8041818	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
2	chr15:79130800-79135800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:79134000-79136600	Weak transcription	HSMMtube	muscle
4	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:79134800-79135800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr15:79134800-79142800	Weak transcription	Fetal Stomach	stomach
7	chr15:79135000-79136200	Enhancers	GM12878-XiMat	blood

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