Variant report

Variant	rs7175271
Chromosome Location	chr15:79144509-79144510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79135320..79138414-chr15:79142742..79145472,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10851913	0.82[ASN][1000 genomes]
rs10851914	0.81[ASN][1000 genomes]
rs11636545	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11856903	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595538	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12898532	0.84[ASN][1000 genomes]
rs12911969	0.82[ASN][1000 genomes]
rs28439027	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4341710	0.98[EUR][1000 genomes]
rs4401016	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4533253	0.98[EUR][1000 genomes]
rs4608303	0.98[EUR][1000 genomes]
rs6495341	0.98[EUR][1000 genomes]
rs6495346	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7164529	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166501	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7166723	0.97[EUR][1000 genomes]
rs7173955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7180375	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7181033	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs734287	0.82[ASN][1000 genomes]
rs7402286	0.84[ASN][1000 genomes]
rs7402877	0.98[EUR][1000 genomes]
rs7403393	0.98[EUR][1000 genomes]
rs7403438	0.98[EUR][1000 genomes]
rs7403442	0.97[EUR][1000 genomes]
rs8027870	0.98[EUR][1000 genomes]
rs8028410	0.98[EUR][1000 genomes]
rs8029173	0.97[EUR][1000 genomes]
rs8035783	0.98[EUR][1000 genomes]
rs8037017	0.97[EUR][1000 genomes]
rs8041818	0.98[EUR][1000 genomes]
rs9806693	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3350860	chr15:79144102-79144521	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79143000-79144600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:79143800-79145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:79143800-79146800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:79143800-79147000	Weak transcription	Brain Anterior Caudate	brain
6	chr15:79143800-79152200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:79143800-79152200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:79143800-79152200	Weak transcription	Fetal Lung	lung
9	chr15:79144000-79152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:79144200-79147000	Weak transcription	HepG2	liver

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