Variant report

Variant	rs28439505
Chromosome Location	chr4:127549382-127549383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127548164..127549529-chr4:128045945..128046997,5	MCF-7	breast:
2	chr4:127548162..127549915-chr4:127554441..127556148,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10005429	1.00[AMR][1000 genomes]
rs10012156	1.00[AMR][1000 genomes]
rs10018103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10018738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020503	1.00[AMR][1000 genomes]
rs10020664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025937	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027349	1.00[AMR][1000 genomes]
rs10034045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11930592	1.00[AMR][1000 genomes]
rs11933364	1.00[AMR][1000 genomes]
rs11935137	1.00[AMR][1000 genomes]
rs11947628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434502	1.00[AMR][1000 genomes]
rs13435151	0.98[AFR][1000 genomes]
rs1552664	1.00[AMR][1000 genomes]
rs17011392	1.00[AMR][1000 genomes]
rs28386846	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28499063	1.00[AMR][1000 genomes]
rs28531370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578629	1.00[AMR][1000 genomes]
rs28592768	1.00[AMR][1000 genomes]
rs28625618	1.00[AMR][1000 genomes]
rs28670367	1.00[AMR][1000 genomes]
rs28671296	1.00[AMR][1000 genomes]
rs28697890	1.00[AMR][1000 genomes]
rs28817587	1.00[AMR][1000 genomes]
rs28890552	1.00[AMR][1000 genomes]
rs7653964	1.00[AMR][1000 genomes]
rs7681644	1.00[AMR][1000 genomes]
rs7691426	1.00[AMR][1000 genomes]
rs9884514	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1009499	chr4:127532856-127659010	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv537243	chr4:127532856-127659010	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127549000-127551600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:127549000-127553000	Weak transcription	K562	blood

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