Variant report
| Variant | rs28670367 |
|---|---|
| Chromosome Location | chr4:127516790-127516791 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127508955..127510506-chr4:127516360..127517989,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10005429 | 1.00[AMR][1000 genomes] |
| rs10012156 | 1.00[AMR][1000 genomes] |
| rs10018103 | 1.00[AMR][1000 genomes] |
| rs10018738 | 1.00[AMR][1000 genomes] |
| rs10020503 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10020664 | 1.00[AMR][1000 genomes] |
| rs10020702 | 1.00[AMR][1000 genomes] |
| rs10025937 | 1.00[AMR][1000 genomes] |
| rs10027349 | 1.00[AMR][1000 genomes] |
| rs10034045 | 1.00[AMR][1000 genomes] |
| rs10034305 | 1.00[AMR][1000 genomes] |
| rs11930592 | 1.00[AMR][1000 genomes] |
| rs11933364 | 1.00[AMR][1000 genomes] |
| rs11935137 | 1.00[AMR][1000 genomes] |
| rs11947628 | 1.00[AMR][1000 genomes] |
| rs13434502 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1552664 | 1.00[AMR][1000 genomes] |
| rs17011392 | 1.00[AMR][1000 genomes] |
| rs28386846 | 1.00[AMR][1000 genomes] |
| rs28439505 | 1.00[AMR][1000 genomes] |
| rs28499063 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28531370 | 1.00[AMR][1000 genomes] |
| rs28578629 | 1.00[AMR][1000 genomes] |
| rs28592768 | 1.00[AMR][1000 genomes] |
| rs28625618 | 1.00[AMR][1000 genomes] |
| rs28671296 | 1.00[AMR][1000 genomes] |
| rs28697890 | 1.00[AMR][1000 genomes] |
| rs28817587 | 1.00[AMR][1000 genomes] |
| rs28890552 | 1.00[AMR][1000 genomes] |
| rs7653964 | 1.00[AMR][1000 genomes] |
| rs7681644 | 1.00[AMR][1000 genomes] |
| rs7691426 | 1.00[AMR][1000 genomes] |
| rs9884514 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012833 | chr4:127468474-127760933 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv537242 | chr4:127468474-127760933 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv524850 | chr4:127470903-127768849 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013854 | chr4:127508969-127663216 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127516200-127518200 | ZNF genes & repeats | K562 | blood |
| 2 | chr4:127516400-127517200 | Enhancers | Colon Smooth Muscle | Colon |
