Variant report

Variant	rs2844785
Chromosome Location	chr6:30147230-30147231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2188100	0.88[EUR][1000 genomes]
rs2517612	0.88[EUR][1000 genomes]
rs2517613	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2517615	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2517618	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2517645	0.82[EUR][1000 genomes]
rs2523715	0.88[EUR][1000 genomes]
rs2523719	0.89[EUR][1000 genomes]
rs2523720	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs885913	0.88[EUR][1000 genomes]
rs885916	0.86[EUR][1000 genomes]
rs929157	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884057	chr6:30140540-30149251	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844785	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30139000-30152000	Weak transcription	Liver	Liver
2	chr6:30142000-30149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
4	chr6:30146200-30147600	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links