Variant report

Variant	rs929157
Chromosome Location	chr6:30137209-30137210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30137100-30137250	GM06990	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30137208-30137258	SK-N-SH_RA	brain:	n/a
2	chr6:30137208-30137258	HCPEpiC	choroid plexus:	n/a
3	chr6:30137208-30137258	A549	lung:	n/a
4	chr6:30137208-30137258	HPAEpiC	pulmonary alveolar:	n/a
5	chr6:30137208-30137258	NHDF-neo	bronchial:	n/a
6	chr6:30137208-30137258	HNPCEpiC	eye:	n/a
7	chr6:30137208-30137258	HEK293	kidney:	embryo
8	chr6:30137208-30137258	AG09319	gingival:	n/a
9	chr6:30137208-30137258	HCF	heart:	n/a
10	chr6:30137208-30137258	Jurkat	blood:	n/a
11	chr6:30137208-30137258	AG10803	skin:	n/a
12	chr6:30137208-30137258	HUVEC	blood vessel:	n/a
13	chr6:30137208-30137258	NHBE	bronchial:	n/a
14	chr6:30137208-30137258	HRCEpiC	kidney:	n/a
15	chr6:30137208-30137258	NH-A	brain:	n/a
16	chr6:30137208-30137258	SK-N-SH	brain:	n/a
17	chr6:30137208-30137258	HCM	heart:	n/a
18	chr6:30137208-30137258	BJ	skin:	n/a
19	chr6:30137208-30137258	LNCaP	prostate:	n/a
20	chr6:30137208-30137258	HCT-116	colon:	n/a
21	chr6:30137208-30137258	PANC-1	pancreas:	n/a
22	chr6:30137208-30137258	Hepatocyte	liver:	n/a
23	chr6:30137208-30137258	U87	brain:	n/a
24	chr6:30137208-30137258	K562	blood:	n/a
25	chr6:30137208-30137258	SKMC	muscle:	n/a
26	chr6:30137208-30137258	PrEC	prostate:	n/a
27	chr6:30137208-30137258	HMEC	breast:	n/a
28	chr6:30137208-30137258	HRPEpiC	eye:	n/a
29	chr6:30137208-30137258	CMK	blood:	n/a
30	chr6:30137208-30137258	AG04449	skin:	fetal
31	chr6:30137208-30137258	MCF10A-Er-Src	breast:	n/a
32	chr6:30137208-30137258	GM12891	blood:	n/a
33	chr6:30137208-30137258	RPTEC	kidney:	n/a
34	chr6:30137208-30137258	SAEC	small airway:	n/a
35	chr6:30137208-30137258	NT2-D1	testis:	n/a
36	chr6:30137208-30137258	GM19239	blood:	n/a
37	chr6:30137208-30137258	HEEpiC	esophagus:	n/a
38	chr6:30137208-30137258	GM06990	blood:	n/a
39	chr6:30137208-30137258	ProgFib	skin:	n/a
40	chr6:30137208-30137258	Caco-2	colon:	n/a
41	chr6:30137208-30137258	ECC-1	luminal epithelium:	n/a
42	chr6:30137208-30137258	HL-60	blood:	n/a
43	chr6:30137208-30137258	GM12878	blood:	n/a
44	chr6:30137208-30137258	NB4	blood:	n/a
45	chr6:30137208-30137258	H1-hESC	embryonic stem cell:	embryo
46	chr6:30137208-30137258	MCF-7	breast:	n/a
47	chr6:30137208-30137258	AoSMC	blood vessel:	n/a
48	chr6:30137208-30137258	IMR90	lung:	fetal
49	chr6:30137208-30137258	GM12892	blood:	n/a
50	chr6:30137208-30137258	T-47D	breast:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30127758..30130615-chr6:30135691..30137598,2	K562	blood:
2	chr6:30127588..30130090-chr6:30135576..30138983,3	K562	blood:

No data

Variant related genes	Relation type
TRIM15	TF binding region
TRIM15	CpG island
ENSG00000204613	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2188100	0.88[EUR][1000 genomes]
rs2517612	0.88[EUR][1000 genomes]
rs2517613	0.89[EUR][1000 genomes]
rs2517615	0.89[EUR][1000 genomes]
rs2517618	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2517645	0.82[EUR][1000 genomes]
rs2523715	0.88[EUR][1000 genomes]
rs2523719	0.89[EUR][1000 genomes]
rs2523720	0.89[EUR][1000 genomes]
rs2844785	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs885913	0.88[EUR][1000 genomes]
rs885916	0.86[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs929157	HLA-C	Cis_chr	lymphoblastoid	RTeQTL
rs929157	ZNF323	cis	parietal	SCAN
rs929157	ZKSCAN3	cis	parietal	SCAN
rs929157	ZNF192	cis	parietal	SCAN
rs929157	BTN2A1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30134600-30139600	Strong transcription	Duodenum Mucosa	Duodenum
2	chr6:30134800-30137400	Strong transcription	Fetal Intestine Large	intestine
3	chr6:30134800-30137400	Strong transcription	Fetal Intestine Small	intestine
4	chr6:30134800-30137600	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr6:30134800-30137800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:30134800-30139600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr6:30135000-30137800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:30135000-30139000	Strong transcription	Liver	Liver
9	chr6:30135400-30137400	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:30135600-30141200	Strong transcription	HepG2	liver
11	chr6:30136600-30137600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:30137200-30139600	Weak transcription	Colonic Mucosa	Colon

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