Variant report

Variant	rs28448874
Chromosome Location	chr4:107365780-107365781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10000176	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10008732	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10015464	0.92[AFR][1000 genomes]
rs10015554	0.92[AFR][1000 genomes]
rs28484601	0.89[AFR][1000 genomes]
rs28629898	0.92[AFR][1000 genomes]
rs2866900	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2866901	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2866902	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28877901	0.89[AFR][1000 genomes]
rs2903422	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6827275	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6827339	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7673871	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7688898	0.89[AFR][1000 genomes]
rs7689106	0.91[AFR][1000 genomes]
rs9884189	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107355400-107366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107365400-107366600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:107365400-107366600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:107365600-107366600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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