Variant report

Variant	rs28877901
Chromosome Location	chr4:107392566-107392567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10000176	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10008732	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10015464	0.88[AFR][1000 genomes]
rs10015554	0.88[AFR][1000 genomes]
rs17036757	0.89[AMR][1000 genomes]
rs28448874	0.89[AFR][1000 genomes]
rs28484601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28629898	0.88[AFR][1000 genomes]
rs2866900	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2866901	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2866902	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2903422	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4317268	0.89[AMR][1000 genomes]
rs6827275	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6827339	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6829600	0.89[AMR][1000 genomes]
rs7673871	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7688898	0.85[AFR][1000 genomes]
rs7689106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884189	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107392000-107392600	Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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