Variant report
| Variant | rs28629898 |
|---|---|
| Chromosome Location | chr4:107355423-107355424 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:107335618..107338970-chr4:107353446..107357718,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222333 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10000176 | 0.93[AFR][1000 genomes] |
| rs10008732 | 0.92[AFR][1000 genomes] |
| rs10008766 | 1.00[EUR][1000 genomes] |
| rs10015464 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10015554 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28448874 | 0.92[AFR][1000 genomes] |
| rs28484601 | 0.88[AFR][1000 genomes] |
| rs2866900 | 0.92[AFR][1000 genomes] |
| rs2866901 | 0.93[AFR][1000 genomes] |
| rs2866902 | 0.89[AFR][1000 genomes] |
| rs28802641 | 1.00[EUR][1000 genomes] |
| rs28877901 | 0.88[AFR][1000 genomes] |
| rs2903422 | 0.87[AFR][1000 genomes] |
| rs2903423 | 1.00[EUR][1000 genomes] |
| rs6820792 | 1.00[EUR][1000 genomes] |
| rs6827275 | 0.93[AFR][1000 genomes] |
| rs6827339 | 0.93[AFR][1000 genomes] |
| rs72883880 | 1.00[EUR][1000 genomes] |
| rs72887203 | 1.00[EUR][1000 genomes] |
| rs72887220 | 1.00[EUR][1000 genomes] |
| rs73837109 | 1.00[EUR][1000 genomes] |
| rs73837111 | 1.00[EUR][1000 genomes] |
| rs73837112 | 1.00[EUR][1000 genomes] |
| rs73837116 | 1.00[EUR][1000 genomes] |
| rs73837117 | 1.00[EUR][1000 genomes] |
| rs73837118 | 1.00[EUR][1000 genomes] |
| rs73837119 | 1.00[EUR][1000 genomes] |
| rs73837120 | 1.00[EUR][1000 genomes] |
| rs73837121 | 1.00[EUR][1000 genomes] |
| rs73837123 | 1.00[EUR][1000 genomes] |
| rs7673871 | 0.93[AFR][1000 genomes] |
| rs7688898 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7689106 | 0.86[AFR][1000 genomes] |
| rs9884189 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008963 | chr4:107282656-107384924 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:107355400-107366000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
