Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008766	1.00[EUR][1000 genomes]
rs10015464	1.00[EUR][1000 genomes]
rs10015554	1.00[EUR][1000 genomes]
rs28629898	1.00[EUR][1000 genomes]
rs28802641	1.00[EUR][1000 genomes]
rs2903423	1.00[EUR][1000 genomes]
rs59474187	0.93[AFR][1000 genomes]
rs60283634	0.93[AFR][1000 genomes]
rs6820792	1.00[EUR][1000 genomes]
rs72883880	1.00[EUR][1000 genomes]
rs72887203	1.00[EUR][1000 genomes]
rs72887220	1.00[EUR][1000 genomes]
rs73837109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837110	0.93[AFR][1000 genomes]
rs73837111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837112	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837130	0.87[AFR][1000 genomes]
rs73837155	0.85[AMR][1000 genomes]
rs7688898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107330800-107332600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:107331000-107332400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:107331000-107333600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:107331200-107335600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:107331200-107335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:107331400-107332400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:107331400-107332600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:107331400-107332600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:107331400-107333400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:107331600-107333200	Weak transcription	Fetal Kidney	kidney
11	chr4:107331600-107335600	Weak transcription	Osteobl	bone
12	chr4:107331800-107332800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:107332000-107332400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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