Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10008766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015464	1.00[EUR][1000 genomes]
rs10015554	1.00[EUR][1000 genomes]
rs28528699	0.97[AFR][1000 genomes]
rs28629898	1.00[EUR][1000 genomes]
rs2866903	0.94[AFR][1000 genomes]
rs28756067	0.98[AFR][1000 genomes]
rs2903423	1.00[EUR][1000 genomes]
rs4612007	0.98[AFR][1000 genomes]
rs6813731	0.95[AFR][1000 genomes]
rs6820792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72883880	1.00[EUR][1000 genomes]
rs72887203	1.00[EUR][1000 genomes]
rs72887220	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73837109	1.00[EUR][1000 genomes]
rs73837111	1.00[EUR][1000 genomes]
rs73837112	1.00[EUR][1000 genomes]
rs73837116	1.00[EUR][1000 genomes]
rs73837117	1.00[EUR][1000 genomes]
rs73837118	1.00[EUR][1000 genomes]
rs73837119	1.00[EUR][1000 genomes]
rs73837120	1.00[EUR][1000 genomes]
rs73837121	1.00[EUR][1000 genomes]
rs73837123	1.00[EUR][1000 genomes]
rs7688898	1.00[EUR][1000 genomes]
rs9990642	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107355400-107366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107364200-107365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search: