Variant report
| Variant | rs2903423 |
|---|---|
| Chromosome Location | chr4:107346719-107346720 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10008766 | 1.00[EUR][1000 genomes] |
| rs10015464 | 1.00[EUR][1000 genomes] |
| rs10015554 | 1.00[EUR][1000 genomes] |
| rs28629898 | 1.00[EUR][1000 genomes] |
| rs28802641 | 1.00[EUR][1000 genomes] |
| rs56907238 | 0.88[AFR][1000 genomes] |
| rs61621018 | 0.87[AFR][1000 genomes] |
| rs6820792 | 1.00[EUR][1000 genomes] |
| rs72883880 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72885601 | 0.97[AFR][1000 genomes] |
| rs72887203 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887220 | 1.00[EUR][1000 genomes] |
| rs73837109 | 1.00[EUR][1000 genomes] |
| rs73837111 | 1.00[EUR][1000 genomes] |
| rs73837112 | 1.00[EUR][1000 genomes] |
| rs73837116 | 1.00[EUR][1000 genomes] |
| rs73837117 | 1.00[EUR][1000 genomes] |
| rs73837118 | 1.00[EUR][1000 genomes] |
| rs73837119 | 1.00[EUR][1000 genomes] |
| rs73837120 | 1.00[EUR][1000 genomes] |
| rs73837121 | 1.00[EUR][1000 genomes] |
| rs73837123 | 1.00[EUR][1000 genomes] |
| rs7688898 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830029 | chr4:107203096-107353483 | Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008963 | chr4:107282656-107384924 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | esv3362743 | chr4:107346660-107346967 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:107346200-107350400 | Weak transcription | Fetal Muscle Leg | muscle |
