Variant report

Variant	rs72885601
Chromosome Location	chr4:107350509-107350510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:107350201-107350524	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000249613	TF binding region

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs11947830	0.83[AMR][1000 genomes]
rs28829295	0.83[AMR][1000 genomes]
rs2903423	0.97[AFR][1000 genomes]
rs55738178	0.85[AMR][1000 genomes]
rs55764348	0.83[AMR][1000 genomes]
rs55844204	0.83[AMR][1000 genomes]
rs56112627	0.83[AMR][1000 genomes]
rs56116680	0.83[AMR][1000 genomes]
rs56312801	0.85[AMR][1000 genomes]
rs56313516	0.83[AMR][1000 genomes]
rs56338587	0.83[AMR][1000 genomes]
rs56393563	0.83[AMR][1000 genomes]
rs56894273	0.83[AMR][1000 genomes]
rs56907238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57683733	0.83[AMR][1000 genomes]
rs57820715	0.83[AMR][1000 genomes]
rs58172732	0.83[AMR][1000 genomes]
rs58214030	0.83[AMR][1000 genomes]
rs58275655	0.85[AMR][1000 genomes]
rs58494189	0.83[AMR][1000 genomes]
rs59024949	0.83[AMR][1000 genomes]
rs59474187	0.83[AMR][1000 genomes]
rs60283634	0.83[AMR][1000 genomes]
rs60393377	0.83[AMR][1000 genomes]
rs60865730	0.83[AMR][1000 genomes]
rs61621018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829433	0.83[AMR][1000 genomes]
rs6839070	0.83[AMR][1000 genomes]
rs72883857	0.83[AMR][1000 genomes]
rs72883861	0.83[AMR][1000 genomes]
rs72883863	0.83[AMR][1000 genomes]
rs72883864	0.83[AMR][1000 genomes]
rs72883867	0.83[AMR][1000 genomes]
rs72883869	0.83[AMR][1000 genomes]
rs72883880	0.98[AFR][1000 genomes]
rs72887203	0.98[AFR][1000 genomes]
rs72887204	0.83[AMR][1000 genomes]
rs72887217	0.83[AMR][1000 genomes]
rs72887224	0.83[AMR][1000 genomes]
rs72887233	1.00[AMR][1000 genomes]
rs72887241	0.83[AMR][1000 genomes]
rs72887249	0.83[AMR][1000 genomes]
rs72887251	0.83[AMR][1000 genomes]
rs72887254	0.83[AMR][1000 genomes]
rs72889018	1.00[AMR][1000 genomes]
rs72889019	1.00[AMR][1000 genomes]
rs72889045	0.83[AMR][1000 genomes]
rs72891648	0.85[AMR][1000 genomes]
rs72891658	0.85[AMR][1000 genomes]
rs72891670	0.85[AMR][1000 genomes]
rs72891687	0.85[AMR][1000 genomes]
rs73837110	0.83[AMR][1000 genomes]
rs73837112	0.83[AMR][1000 genomes]
rs73837130	0.83[AMR][1000 genomes]
rs73838146	0.85[AMR][1000 genomes]
rs73838147	0.83[AMR][1000 genomes]
rs73838154	0.83[AMR][1000 genomes]
rs73838155	0.83[AMR][1000 genomes]
rs73838160	0.83[AMR][1000 genomes]
rs73838161	0.83[AMR][1000 genomes]
rs73838165	0.83[AMR][1000 genomes]
rs73838166	0.83[AMR][1000 genomes]
rs73838169	0.83[AMR][1000 genomes]
rs73838172	0.83[AMR][1000 genomes]
rs73838174	0.83[AMR][1000 genomes]
rs73838175	0.83[AMR][1000 genomes]
rs73838181	0.83[AMR][1000 genomes]
rs73838183	0.83[AMR][1000 genomes]
rs73838184	0.83[AMR][1000 genomes]
rs73838189	0.83[AMR][1000 genomes]
rs73838190	0.83[AMR][1000 genomes]
rs73838191	0.83[AMR][1000 genomes]
rs73838192	0.83[AMR][1000 genomes]
rs73838194	0.83[AMR][1000 genomes]
rs73838195	0.83[AMR][1000 genomes]
rs73838197	0.83[AMR][1000 genomes]
rs73839406	0.83[AMR][1000 genomes]
rs73839408	0.83[AMR][1000 genomes]
rs73839409	0.83[AMR][1000 genomes]
rs73839414	0.83[AMR][1000 genomes]
rs73839415	0.83[AMR][1000 genomes]
rs73839417	0.83[AMR][1000 genomes]
rs73839418	0.83[AMR][1000 genomes]
rs73839425	0.83[AMR][1000 genomes]
rs73839427	0.83[AMR][1000 genomes]
rs73839428	0.83[AMR][1000 genomes]
rs73839429	0.83[AMR][1000 genomes]
rs73839432	0.83[AMR][1000 genomes]
rs73839434	0.83[AMR][1000 genomes]
rs73839435	0.83[AMR][1000 genomes]
rs73839436	0.83[AMR][1000 genomes]
rs73839437	0.83[AMR][1000 genomes]
rs73839438	0.83[AMR][1000 genomes]
rs73839439	0.83[AMR][1000 genomes]
rs73839442	0.83[AMR][1000 genomes]
rs73839446	0.83[AMR][1000 genomes]
rs73839447	0.83[AMR][1000 genomes]
rs73839448	0.83[AMR][1000 genomes]
rs73839451	0.83[AMR][1000 genomes]
rs73839454	0.83[AMR][1000 genomes]
rs73839458	0.83[AMR][1000 genomes]
rs73839459	0.83[AMR][1000 genomes]
rs73839461	0.83[AMR][1000 genomes]
rs73839465	0.83[AMR][1000 genomes]
rs7691746	0.83[AMR][1000 genomes]
rs7693156	0.83[AMR][1000 genomes]
rs7698444	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107350400-107350600	Enhancers	Fetal Muscle Leg	muscle
2	chr4:107350400-107351000	Enhancers	Fetal Lung	lung

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