Variant report

Variant	rs58214030
Chromosome Location	chr4:107355769-107355770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107335618..107338970-chr4:107353446..107357718,3	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
2	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
3	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
4	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
5	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
6	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
7	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636
8	lnc-AIMP1-1	chr4:107355769-107355858	XLOC_003636

No data

Variant related genes	Relation type
ENSG00000222333	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11947830	1.00[AMR][1000 genomes]
rs28829295	1.00[AMR][1000 genomes]
rs55764348	1.00[AMR][1000 genomes]
rs55844204	1.00[AMR][1000 genomes]
rs56112627	1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	1.00[AMR][1000 genomes]
rs56338587	1.00[AMR][1000 genomes]
rs56393563	1.00[AMR][1000 genomes]
rs56894273	1.00[AMR][1000 genomes]
rs56907238	0.83[AMR][1000 genomes]
rs57683733	1.00[AMR][1000 genomes]
rs57820715	1.00[AMR][1000 genomes]
rs58172732	1.00[AMR][1000 genomes]
rs58494189	1.00[AMR][1000 genomes]
rs59024949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59474187	1.00[AMR][1000 genomes]
rs60283634	1.00[AMR][1000 genomes]
rs60393377	1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs61621018	0.83[AMR][1000 genomes]
rs6829433	1.00[AMR][1000 genomes]
rs6839070	1.00[AMR][1000 genomes]
rs72883857	1.00[AMR][1000 genomes]
rs72883861	1.00[AMR][1000 genomes]
rs72883863	1.00[AMR][1000 genomes]
rs72883864	1.00[AMR][1000 genomes]
rs72883867	1.00[AMR][1000 genomes]
rs72883869	1.00[AMR][1000 genomes]
rs72885601	0.83[AMR][1000 genomes]
rs72887204	1.00[AMR][1000 genomes]
rs72887217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887233	0.83[AMR][1000 genomes]
rs72887241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887251	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889018	0.83[AMR][1000 genomes]
rs72889019	0.83[AMR][1000 genomes]
rs72889045	1.00[AMR][1000 genomes]
rs73837110	1.00[AMR][1000 genomes]
rs73837112	1.00[AMR][1000 genomes]
rs73837130	1.00[AMR][1000 genomes]
rs73837155	0.83[AMR][1000 genomes]
rs73838154	1.00[AMR][1000 genomes]
rs73838155	1.00[AMR][1000 genomes]
rs73838160	1.00[AMR][1000 genomes]
rs73838161	1.00[AMR][1000 genomes]
rs73838165	1.00[AMR][1000 genomes]
rs73838166	1.00[AMR][1000 genomes]
rs73838169	1.00[AMR][1000 genomes]
rs73838172	1.00[AMR][1000 genomes]
rs73838174	1.00[AMR][1000 genomes]
rs73838175	1.00[AMR][1000 genomes]
rs73838181	1.00[AMR][1000 genomes]
rs73838183	1.00[AMR][1000 genomes]
rs73838184	1.00[AMR][1000 genomes]
rs73838189	1.00[AMR][1000 genomes]
rs73838190	1.00[AMR][1000 genomes]
rs73838191	1.00[AMR][1000 genomes]
rs73838192	1.00[AMR][1000 genomes]
rs73838194	1.00[AMR][1000 genomes]
rs73838195	1.00[AMR][1000 genomes]
rs73838197	1.00[AMR][1000 genomes]
rs73839406	1.00[AMR][1000 genomes]
rs73839408	1.00[AMR][1000 genomes]
rs73839409	1.00[AMR][1000 genomes]
rs73839414	1.00[AMR][1000 genomes]
rs73839415	1.00[AMR][1000 genomes]
rs73839417	1.00[AMR][1000 genomes]
rs73839418	1.00[AMR][1000 genomes]
rs73839425	1.00[AMR][1000 genomes]
rs73839427	1.00[AMR][1000 genomes]
rs73839428	1.00[AMR][1000 genomes]
rs73839429	1.00[AMR][1000 genomes]
rs73839432	1.00[AMR][1000 genomes]
rs73839434	1.00[AMR][1000 genomes]
rs73839435	1.00[AMR][1000 genomes]
rs73839436	1.00[AMR][1000 genomes]
rs73839437	1.00[AMR][1000 genomes]
rs73839438	1.00[AMR][1000 genomes]
rs73839439	1.00[AMR][1000 genomes]
rs73839442	1.00[AMR][1000 genomes]
rs73839446	1.00[AMR][1000 genomes]
rs73839447	1.00[AMR][1000 genomes]
rs73839448	1.00[AMR][1000 genomes]
rs73839451	1.00[AMR][1000 genomes]
rs73839454	1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	1.00[AMR][1000 genomes]
rs73839461	1.00[AMR][1000 genomes]
rs73839465	1.00[AMR][1000 genomes]
rs7691746	1.00[AMR][1000 genomes]
rs7693156	1.00[AMR][1000 genomes]
rs7698444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107355400-107366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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