Variant report

Variant	rs73839427
Chromosome Location	chr4:107237524-107237525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:421)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:421 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr4:107237108-107237989	HepG2	liver:	n/a	chr4:107237597-107237611
2	CEBPD	chr4:107237052-107238119	K562	blood:	n/a	n/a
3	JUN	chr4:107237257-107238045	K562	blood:	n/a	n/a
4	MAX	chr4:107236720-107237895	HepG2	liver:	n/a	n/a
5	FOS	chr4:107237497-107237844	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr4:107237319-107238005	K562	blood:	n/a	n/a
7	MYC	chr4:107236766-107238006	K562	blood:	n/a	n/a
8	MXI1	chr4:107235967-107238818	SK-N-SH	brain:	n/a	n/a
9	RFX5	chr4:107236341-107238091	Hela-S3	cervix:	n/a	n/a
10	NFATC1	chr4:107237155-107237996	GM12878	blood:	n/a	n/a
11	YY1	chr4:107237026-107237868	HCT-116	colon:	n/a	n/a
12	POLR2A	chr4:107236923-107238061	MCF-7	breast:	n/a	n/a
13	TBP	chr4:107236637-107238183	HepG2	liver:	n/a	n/a
14	POLR2A	chr4:107236617-107238518	GM12891	blood:	n/a	n/a
15	POLR2A	chr4:107236627-107238088	GM12891	blood:	n/a	n/a
16	BHLHE40	chr4:107237099-107238030	HepG2	liver:	n/a	chr4:107237160-107237176
17	MXI1	chr4:107236575-107239230	IMR90	lung:	n/a	n/a
18	SRF	chr4:107237090-107237973	ECC-1	luminal epithelium:	n/a	n/a
19	HEY1	chr4:107236539-107237553	K562	blood:	n/a	n/a
20	USF2	chr4:107236831-107238364	GM12878	blood:	n/a	chr4:107237160-107237176
21	TAF1	chr4:107237082-107237574	GM12892	blood:	n/a	n/a
22	GABPA	chr4:107237113-107238128	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr4:107236164-107239299	GM12878	blood:	n/a	n/a
24	JUND	chr4:107236271-107237928	K562	blood:	n/a	chr4:107236681-107236690
25	POLR2A	chr4:107236524-107238338	GM12892	blood:	n/a	n/a
26	POLR2A	chr4:107236591-107238068	K562	blood:	n/a	n/a
27	TAF1	chr4:107237050-107238076	GM12878	blood:	n/a	n/a
28	MAX	chr4:107236758-107238152	MCF-7	breast:	n/a	n/a
29	ETS1	chr4:107237100-107237774	GM12878	blood:	n/a	n/a
30	YY1	chr4:107237214-107237867	SK-N-SH_RA	brain:	n/a	n/a
31	POLR2A	chr4:107236785-107238175	HEK293	kidney:	n/a	n/a
32	NFIC	chr4:107237123-107238170	GM12878	blood:	n/a	n/a
33	ELF1	chr4:107236976-107238076	MCF-7	breast:	n/a	chr4:107237594-107237605 chr4:107237587-107237600
34	PAX5	chr4:107237026-107237957	GM12878	blood:	n/a	chr4:107237591-107237600
35	TBL1XR1	chr4:107237208-107238218	GM12878	blood:	n/a	n/a
36	POLR2A	chr4:107236520-107238647	GM12878	blood:	n/a	n/a
37	CREB1	chr4:107237002-107238152	H1-hESC	embryonic stem cell:	n/a	n/a
38	ZC3H11A	chr4:107237149-107238085	K562	blood:	n/a	n/a
39	EP300	chr4:107236655-107238127	GM12878	blood:	n/a	chr4:107237920-107237929 chr4:107237595-107237609
40	POLR2A	chr4:107236605-107238109	H1-hESC	embryonic stem cell:	n/a	n/a
41	SRF	chr4:107237091-107237945	MCF-7	breast:	n/a	n/a
42	GTF2B	chr4:107236979-107237821	K562	blood:	n/a	n/a
43	TAL1	chr4:107236717-107238373	K562	blood:	n/a	n/a
44	ELF1	chr4:107237002-107237959	GM12878	blood:	n/a	chr4:107237594-107237605 chr4:107237587-107237600
45	MYC	chr4:107237282-107238612	MCF10A-Er-Src	breast:	n/a	n/a
46	POLR2A	chr4:107236923-107238337	HUVEC	blood vessel:	n/a	n/a
47	ATF3	chr4:107237243-107237804	K562	blood:	n/a	chr4:107237306-107237314
48	ZNF143	chr4:107237031-107237929	K562	blood:	n/a	n/a
49	MAX	chr4:107236671-107238527	K562	blood:	n/a	n/a
50	POLR2A	chr4:107236612-107238425	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:107237488-107237538	ovcar-3	ovarian:	n/a
2	chr4:107237488-107237538	HCM	heart:	n/a
3	chr4:107237488-107237538	NHDF-neo	bronchial:	n/a
4	chr4:107237488-107237538	SK-N-SH_RA	brain:	n/a
5	chr4:107237488-107237538	BE2_C	brain:	n/a
6	chr4:107237488-107237538	H1-hESC	embryonic stem cell:	embryo
7	chr4:107237488-107237538	PFSK-1	brain:	n/a
8	chr4:107237488-107237538	HRCEpiC	kidney:	n/a
9	chr4:107237488-107237538	RPTEC	kidney:	n/a
10	chr4:107237488-107237538	SK-N-MC	brain:	n/a
11	chr4:107237488-107237538	AoSMC	blood vessel:	n/a
12	chr4:107237488-107237538	HRE	kidney:	n/a
13	chr4:107237488-107237538	HNPCEpiC	eye:	n/a
14	chr4:107237488-107237538	NH-A	brain:	n/a
15	chr4:107237488-107237538	Caco-2	colon:	n/a
16	chr4:107237488-107237538	HCPEpiC	choroid plexus:	n/a
17	chr4:107237488-107237538	HEK293	kidney:	embryo
18	chr4:107237488-107237538	PANC-1	pancreas:	n/a
19	chr4:107237488-107237538	SAEC	small airway:	n/a
20	chr4:107237488-107237538	GM12878	blood:	n/a
21	chr4:107237488-107237538	AG10803	skin:	n/a
22	chr4:107237488-107237538	HAEpiC	amniotic membrane:	n/a
23	chr4:107237488-107237538	BJ	skin:	n/a
24	chr4:107237488-107237538	CMK	blood:	n/a
25	chr4:107237488-107237538	HIPEpiC	eye:	n/a
26	chr4:107237488-107237538	GM06990	blood:	n/a
27	chr4:107237488-107237538	HepG2	liver:	n/a
28	chr4:107237488-107237538	AG09309	skin:	n/a
29	chr4:107237488-107237538	A549	lung:	n/a
30	chr4:107237488-107237538	HRPEpiC	eye:	n/a
31	chr4:107237488-107237538	GM12892	blood:	n/a
32	chr4:107237488-107237538	Hepatocyte	liver:	n/a
33	chr4:107237488-107237538	HCT-116	colon:	n/a
34	chr4:107237488-107237538	HL-60	blood:	n/a
35	chr4:107237488-107237538	HCF	heart:	n/a
36	chr4:107237488-107237538	AG04450	lung:	fetal
37	chr4:107237488-107237538	ProgFib	skin:	n/a
38	chr4:107237488-107237538	K562	blood:	n/a
39	chr4:107237488-107237538	Jurkat	blood:	n/a
40	chr4:107237488-107237538	HEEpiC	esophagus:	n/a
41	chr4:107237488-107237538	HMEC	breast:	n/a
42	chr4:107237488-107237538	IMR90	lung:	fetal
43	chr4:107237488-107237538	GM12891	blood:	n/a
44	chr4:107237488-107237538	NB4	blood:	n/a
45	chr4:107237488-107237538	T-47D	breast:	n/a
46	chr4:107237488-107237538	NT2-D1	testis:	n/a
47	chr4:107237488-107237538	Hela-S3	cervix:	n/a
48	chr4:107237488-107237538	AG04449	skin:	fetal
49	chr4:107237488-107237538	LNCaP	prostate:	n/a
50	chr4:107237488-107237538	U87	brain:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:107237524..107239037-chr4:107241153..107242940,2	MCF-7	breast:
2	chr4:107226289..107231817-chr4:107234990..107238909,9	MCF-7	breast:
3	chr11:62608849..62609649-chr4:107237489..107238158,2	Hela-S3	cervix:
4	chr20:57463851..57464376-chr4:107236670..107237605,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
TBCK	TF binding region
AIMP1	TF binding region
TBCK	CpG island
AIMP1	CpG island
ENSG00000133316	Chromatin interaction
ENSG00000087460	Chromatin interaction
ENSG00000145348	Chromatin interaction
ENSG00000225806	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11947830	1.00[AMR][1000 genomes]
rs28829295	1.00[AMR][1000 genomes]
rs55643705	0.83[AMR][1000 genomes]
rs55764348	1.00[AMR][1000 genomes]
rs55844204	1.00[AMR][1000 genomes]
rs56112627	1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	1.00[AMR][1000 genomes]
rs56338587	1.00[AMR][1000 genomes]
rs56393563	1.00[AMR][1000 genomes]
rs56885542	1.00[AMR][1000 genomes]
rs56894273	1.00[AMR][1000 genomes]
rs56907238	0.83[AMR][1000 genomes]
rs57683733	1.00[AMR][1000 genomes]
rs57820715	1.00[AMR][1000 genomes]
rs57894506	1.00[AMR][1000 genomes]
rs58172732	1.00[AMR][1000 genomes]
rs58214030	1.00[AMR][1000 genomes]
rs58494189	1.00[AMR][1000 genomes]
rs59024949	1.00[AMR][1000 genomes]
rs59474187	1.00[AMR][1000 genomes]
rs60111429	1.00[AMR][1000 genomes]
rs60283634	1.00[AMR][1000 genomes]
rs60393377	1.00[AMR][1000 genomes]
rs60865730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60910287	0.81[AFR][1000 genomes]
rs61621018	0.83[AMR][1000 genomes]
rs6829433	1.00[AMR][1000 genomes]
rs6839070	1.00[AMR][1000 genomes]
rs72883857	1.00[AMR][1000 genomes]
rs72883861	1.00[AMR][1000 genomes]
rs72883863	1.00[AMR][1000 genomes]
rs72883864	1.00[AMR][1000 genomes]
rs72883867	1.00[AMR][1000 genomes]
rs72883869	1.00[AMR][1000 genomes]
rs72885601	0.83[AMR][1000 genomes]
rs72887204	1.00[AMR][1000 genomes]
rs72887217	1.00[AMR][1000 genomes]
rs72887224	1.00[AMR][1000 genomes]
rs72887233	0.83[AMR][1000 genomes]
rs72887241	1.00[AMR][1000 genomes]
rs72887249	1.00[AMR][1000 genomes]
rs72887251	1.00[AMR][1000 genomes]
rs72887254	1.00[AMR][1000 genomes]
rs72889018	0.83[AMR][1000 genomes]
rs72889019	0.83[AMR][1000 genomes]
rs72889045	1.00[AMR][1000 genomes]
rs73836974	1.00[AMR][1000 genomes]
rs73836978	1.00[AMR][1000 genomes]
rs73836981	1.00[AMR][1000 genomes]
rs73836983	1.00[AMR][1000 genomes]
rs73836993	1.00[AMR][1000 genomes]
rs73837110	1.00[AMR][1000 genomes]
rs73837112	1.00[AMR][1000 genomes]
rs73837130	1.00[AMR][1000 genomes]
rs73837155	0.83[AMR][1000 genomes]
rs73838113	1.00[AMR][1000 genomes]
rs73838114	1.00[AMR][1000 genomes]
rs73838130	1.00[AMR][1000 genomes]
rs73838132	1.00[AMR][1000 genomes]
rs73838134	1.00[AMR][1000 genomes]
rs73838136	1.00[AMR][1000 genomes]
rs73838147	1.00[AMR][1000 genomes]
rs73838154	1.00[AMR][1000 genomes]
rs73838155	1.00[AMR][1000 genomes]
rs73838160	1.00[AMR][1000 genomes]
rs73838161	1.00[AMR][1000 genomes]
rs73838165	1.00[AMR][1000 genomes]
rs73838166	1.00[AMR][1000 genomes]
rs73838169	1.00[AMR][1000 genomes]
rs73838172	1.00[AMR][1000 genomes]
rs73838174	1.00[AMR][1000 genomes]
rs73838175	1.00[AMR][1000 genomes]
rs73838181	1.00[AMR][1000 genomes]
rs73838183	1.00[AMR][1000 genomes]
rs73838184	1.00[AMR][1000 genomes]
rs73838189	1.00[AMR][1000 genomes]
rs73838190	1.00[AMR][1000 genomes]
rs73838191	1.00[AMR][1000 genomes]
rs73838192	1.00[AMR][1000 genomes]
rs73838194	1.00[AMR][1000 genomes]
rs73838195	1.00[AMR][1000 genomes]
rs73838197	1.00[AMR][1000 genomes]
rs73839406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839408	1.00[AMR][1000 genomes]
rs73839409	1.00[AMR][1000 genomes]
rs73839414	1.00[AMR][1000 genomes]
rs73839415	1.00[AMR][1000 genomes]
rs73839417	1.00[AMR][1000 genomes]
rs73839418	1.00[AMR][1000 genomes]
rs73839425	1.00[AMR][1000 genomes]
rs73839428	1.00[AMR][1000 genomes]
rs73839429	1.00[AMR][1000 genomes]
rs73839432	1.00[AMR][1000 genomes]
rs73839434	1.00[AMR][1000 genomes]
rs73839435	1.00[AMR][1000 genomes]
rs73839436	1.00[AMR][1000 genomes]
rs73839437	1.00[AMR][1000 genomes]
rs73839438	1.00[AMR][1000 genomes]
rs73839439	1.00[AMR][1000 genomes]
rs73839442	1.00[AMR][1000 genomes]
rs73839446	1.00[AMR][1000 genomes]
rs73839447	1.00[AMR][1000 genomes]
rs73839448	1.00[AMR][1000 genomes]
rs73839451	1.00[AMR][1000 genomes]
rs73839454	1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	1.00[AMR][1000 genomes]
rs73839461	1.00[AMR][1000 genomes]
rs73839465	1.00[AMR][1000 genomes]
rs7691746	1.00[AMR][1000 genomes]
rs7693156	1.00[AMR][1000 genomes]
rs7698444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107235200-107239000	Active TSS	GM12878-XiMat	blood
2	chr4:107235200-107239000	Active TSS	K562	blood
3	chr4:107235400-107238800	Active TSS	NHLF	lung
4	chr4:107235600-107238400	Active TSS	Hela-S3	cervix
5	chr4:107235600-107239400	Active TSS	A549	lung
6	chr4:107235800-107238800	Active TSS	Fetal Intestine Large	intestine
7	chr4:107236000-107238200	Active TSS	Fetal Brain Female	brain
8	chr4:107236000-107238200	Active TSS	HMEC	breast
9	chr4:107236000-107238600	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr4:107236000-107238600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:107236000-107238600	Active TSS	HSMM	muscle
12	chr4:107236200-107238200	Active TSS	Brain Anterior Caudate	brain
13	chr4:107236200-107238400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:107236200-107238400	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr4:107236200-107238400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:107236200-107238400	Active TSS	Right Ventricle	heart
17	chr4:107236200-107238400	Active TSS	NHEK	skin
18	chr4:107236200-107238600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr4:107236200-107238600	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:107236200-107238600	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr4:107236200-107238600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:107236200-107238600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:107236200-107238800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr4:107236200-107238800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:107236200-107239000	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr4:107236200-107239000	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr4:107236200-107239000	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr4:107236200-107239000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:107236200-107239000	Active TSS	Aorta	Aorta
30	chr4:107236200-107239000	Active TSS	Psoas Muscle	Psoas
31	chr4:107236200-107240000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:107236400-107238200	Active TSS	Primary T cells fromperipheralblood	blood
33	chr4:107236400-107238200	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr4:107236400-107238200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:107236400-107238200	Active TSS	Fetal Kidney	kidney
36	chr4:107236400-107238200	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr4:107236400-107238200	Active TSS	Thymus	Thymus
38	chr4:107236400-107238200	Active TSS	HSMMtube	muscle
39	chr4:107236400-107238400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:107236400-107238400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:107236400-107238400	Active TSS	Brain Angular Gyrus	brain
42	chr4:107236400-107238400	Active TSS	Fetal Stomach	stomach
43	chr4:107236400-107238400	Active TSS	Dnd41	blood
44	chr4:107236400-107238400	Active TSS	NHDF-Ad	bronchial
45	chr4:107236400-107238600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:107236400-107238600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:107236400-107238600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:107236400-107238600	Active TSS	Brain Substantia Nigra	brain
49	chr4:107236400-107238600	Active TSS	Fetal Intestine Small	intestine
50	chr4:107236400-107238600	Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links