Variant report

Variant	rs73838132
Chromosome Location	chr4:107098320-107098321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs55643705	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55764348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55844204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56112627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56338587	1.00[AMR][1000 genomes]
rs56885542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56894273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57820715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57894506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58172732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58494189	1.00[AMR][1000 genomes]
rs59474187	1.00[AMR][1000 genomes]
rs60111429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60283634	1.00[AMR][1000 genomes]
rs60393377	1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs6829433	1.00[AMR][1000 genomes]
rs6839070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836952	1.00[AMR][1000 genomes]
rs73836957	0.83[AMR][1000 genomes]
rs73836962	1.00[AMR][1000 genomes]
rs73836967	1.00[AMR][1000 genomes]
rs73836974	1.00[AMR][1000 genomes]
rs73836978	1.00[AMR][1000 genomes]
rs73836981	1.00[AMR][1000 genomes]
rs73836983	1.00[AMR][1000 genomes]
rs73836993	1.00[AMR][1000 genomes]
rs73836997	0.82[AFR][1000 genomes]
rs73837110	1.00[AMR][1000 genomes]
rs73837112	1.00[AMR][1000 genomes]
rs73838113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838114	1.00[AMR][1000 genomes]
rs73838130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838189	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839406	1.00[AMR][1000 genomes]
rs73839408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839418	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839427	1.00[AMR][1000 genomes]
rs73839428	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839442	1.00[AMR][1000 genomes]
rs73839446	1.00[AMR][1000 genomes]
rs73839447	1.00[AMR][1000 genomes]
rs73839448	1.00[AMR][1000 genomes]
rs73839451	1.00[AMR][1000 genomes]
rs73839454	1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	1.00[AMR][1000 genomes]
rs73839461	1.00[AMR][1000 genomes]
rs73839465	1.00[AMR][1000 genomes]
rs7691746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
7	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
11	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
13	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
14	chr4:107078800-107112200	Weak transcription	Osteobl	bone
15	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:107083800-107114200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
19	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:107084000-107108600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:107084000-107112200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:107084000-107129800	Weak transcription	Lung	lung
24	chr4:107084200-107114000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:107084200-107114000	Weak transcription	HepG2	liver
26	chr4:107084200-107114200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:107084200-107114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
29	chr4:107084400-107112200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:107084600-107111600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:107085000-107114200	Weak transcription	Fetal Intestine Large	intestine
33	chr4:107085000-107114200	Weak transcription	Fetal Thymus	thymus
34	chr4:107085000-107117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:107085000-107150000	Weak transcription	Dnd41	blood
37	chr4:107085400-107098800	Weak transcription	Primary T cells from cord blood	blood
38	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
39	chr4:107085600-107112200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr4:107087000-107104400	Weak transcription	HSMM	muscle
41	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr4:107088400-107166400	Weak transcription	K562	blood
43	chr4:107088800-107116400	Weak transcription	NH-A	brain
44	chr4:107089600-107103600	Weak transcription	Placenta	Placenta
45	chr4:107091200-107114200	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:107091400-107098800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr4:107091400-107103600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:107091400-107110600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:107091400-107114200	Weak transcription	Left Ventricle	heart

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