Variant report

Variant	rs73836997
Chromosome Location	chr4:107055721-107055722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55643705	0.82[AFR][1000 genomes]
rs56112627	0.82[AFR][1000 genomes]
rs56338587	0.81[AFR][1000 genomes]
rs56885542	0.82[AFR][1000 genomes]
rs57820715	0.82[AFR][1000 genomes]
rs57894506	0.82[AFR][1000 genomes]
rs58172732	0.82[AFR][1000 genomes]
rs59605868	1.00[AMR][1000 genomes]
rs60111429	0.82[AFR][1000 genomes]
rs60393377	0.81[AFR][1000 genomes]
rs60910287	1.00[AMR][1000 genomes]
rs6829433	0.81[AFR][1000 genomes]
rs73836985	1.00[AMR][1000 genomes]
rs73836989	1.00[AMR][1000 genomes]
rs73838113	0.94[AFR][1000 genomes]
rs73838130	0.82[AFR][1000 genomes]
rs73838132	0.82[AFR][1000 genomes]
rs73838134	0.82[AFR][1000 genomes]
rs73838136	0.82[AFR][1000 genomes]
rs73838147	0.82[AFR][1000 genomes]
rs73838154	0.82[AFR][1000 genomes]
rs73838155	0.82[AFR][1000 genomes]
rs73838161	0.82[AFR][1000 genomes]
rs73838165	0.82[AFR][1000 genomes]
rs73838166	0.82[AFR][1000 genomes]
rs73838169	0.82[AFR][1000 genomes]
rs73838172	0.82[AFR][1000 genomes]
rs73838174	0.82[AFR][1000 genomes]
rs73838175	0.82[AFR][1000 genomes]
rs73838181	0.82[AFR][1000 genomes]
rs73839442	0.81[AFR][1000 genomes]
rs73839446	0.81[AFR][1000 genomes]
rs73839447	0.81[AFR][1000 genomes]
rs73839448	0.81[AFR][1000 genomes]
rs73839451	0.81[AFR][1000 genomes]
rs73839454	0.81[AFR][1000 genomes]
rs73839459	0.81[AFR][1000 genomes]
rs73839461	0.81[AFR][1000 genomes]
rs73839465	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1851766	chr4:107052107-107062671	ZNF genes & repeats Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv437409	chr4:107052107-107064347	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv437410	chr4:107052107-107064347	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3467678	chr4:107054603-107060101	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3467679	chr4:107054603-107060101	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv595009	chr4:107055696-107059935	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv595010	chr4:107055696-107060841	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv595011	chr4:107055696-107062109	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv595012	chr4:107055696-107062671	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:107037600-107056200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:107037600-107060600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:107037600-107061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
8	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:107038000-107056800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:107053400-107056200	Strong transcription	Ovary	ovary
12	chr4:107053600-107067600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:107053800-107058200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:107053800-107061400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:107053800-107064200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:107053800-107070000	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:107053800-107080000	Weak transcription	Right Ventricle	heart
18	chr4:107053800-107083400	Weak transcription	HSMM	muscle
19	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
20	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr4:107054000-107057600	Weak transcription	Brain Substantia Nigra	brain
22	chr4:107054000-107057800	Weak transcription	Fetal Thymus	thymus
23	chr4:107054000-107057800	Weak transcription	Dnd41	blood
24	chr4:107054000-107063400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:107054000-107066400	Weak transcription	Liver	Liver
26	chr4:107054000-107067000	Weak transcription	Fetal Lung	lung
27	chr4:107054000-107067000	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:107054000-107067800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:107054000-107070000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:107054000-107070400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:107054000-107074400	Weak transcription	HepG2	liver
32	chr4:107054000-107076800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:107054000-107077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:107054000-107077000	Weak transcription	Fetal Intestine Large	intestine
35	chr4:107054000-107077400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:107054000-107077400	Weak transcription	Aorta	Aorta
37	chr4:107054000-107077400	Weak transcription	Fetal Stomach	stomach
38	chr4:107054000-107077400	Weak transcription	Lung	lung
39	chr4:107054000-107081600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
42	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
44	chr4:107054200-107057600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:107054200-107062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:107054200-107065800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:107054200-107070000	Weak transcription	Adipose Nuclei	Adipose
48	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:107054600-107064600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:107054600-107074400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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