Variant report

Variant	rs59605868
Chromosome Location	chr4:107031963-107031964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs60910287	1.00[AMR][1000 genomes]
rs73836952	0.88[AFR][1000 genomes]
rs73836962	0.92[AFR][1000 genomes]
rs73836974	0.80[AFR][1000 genomes]
rs73836978	0.92[AFR][1000 genomes]
rs73836981	0.92[AFR][1000 genomes]
rs73836983	0.92[AFR][1000 genomes]
rs73836985	1.00[AMR][1000 genomes]
rs73836989	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836993	0.80[AFR][1000 genomes]
rs73836997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107033200	Weak transcription	Osteobl	bone
2	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
5	chr4:107012800-107033400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:107026200-107033600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:107026800-107035800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:107029400-107034400	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr4:107029800-107033400	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr4:107029800-107034000	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr4:107029800-107035200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:107030000-107033800	ZNF genes & repeats	Brain Substantia Nigra	brain
16	chr4:107030000-107035400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr4:107030000-107035800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr4:107030200-107032600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
19	chr4:107030200-107033400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:107030200-107034400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr4:107030200-107036200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr4:107030400-107032000	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr4:107030400-107034000	ZNF genes & repeats	Fetal Lung	lung
24	chr4:107030600-107032000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:107030600-107032200	ZNF genes & repeats	Right Ventricle	heart
26	chr4:107030600-107033800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr4:107030600-107033800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:107030600-107035200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
29	chr4:107030600-107035800	ZNF genes & repeats	Liver	Liver
30	chr4:107030800-107032200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr4:107030800-107032600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:107030800-107033400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
33	chr4:107030800-107034200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:107031000-107032000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:107031000-107032000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:107031000-107032200	ZNF genes & repeats	Spleen	Spleen
38	chr4:107031000-107032400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:107031000-107032600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:107031000-107032600	ZNF genes & repeats	Left Ventricle	heart
41	chr4:107031000-107033400	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr4:107031000-107033400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
43	chr4:107031000-107033800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
44	chr4:107031000-107034000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
45	chr4:107031000-107034200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:107031000-107034200	Strong transcription	Thymus	Thymus
47	chr4:107031000-107034200	ZNF genes & repeats	HepG2	liver
48	chr4:107031000-107034400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr4:107031000-107034800	ZNF genes & repeats	Ovary	ovary
50	chr4:107031000-107036200	ZNF genes & repeats	Fetal Intestine Small	intestine

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