Variant report

Variant	rs73836985
Chromosome Location	chr4:107033783-107033784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59605868	1.00[AMR][1000 genomes]
rs60910287	1.00[AMR][1000 genomes]
rs73836989	1.00[AMR][1000 genomes]
rs73836997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
4	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:107026800-107035800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:107029400-107034400	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr4:107029800-107034000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr4:107029800-107035200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:107030000-107033800	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr4:107030000-107035400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr4:107030000-107035800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
14	chr4:107030200-107034400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr4:107030200-107036200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr4:107030400-107034000	ZNF genes & repeats	Fetal Lung	lung
17	chr4:107030600-107033800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr4:107030600-107033800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:107030600-107035200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr4:107030600-107035800	ZNF genes & repeats	Liver	Liver
21	chr4:107030800-107034200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:107031000-107033800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
24	chr4:107031000-107034000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr4:107031000-107034200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:107031000-107034200	Strong transcription	Thymus	Thymus
27	chr4:107031000-107034200	ZNF genes & repeats	HepG2	liver
28	chr4:107031000-107034400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr4:107031000-107034800	ZNF genes & repeats	Ovary	ovary
30	chr4:107031000-107036200	ZNF genes & repeats	Fetal Intestine Small	intestine
31	chr4:107031200-107033800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
32	chr4:107031200-107034000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
33	chr4:107031200-107034400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr4:107031200-107034400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr4:107031200-107034800	ZNF genes & repeats	Primary B cells from cord blood	blood
36	chr4:107031200-107035200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:107031200-107035800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
38	chr4:107031400-107034200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr4:107031600-107033800	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
41	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
42	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:107032000-107034200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:107032000-107034600	Weak transcription	Esophagus	oesophagus
45	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:107032200-107038400	Weak transcription	Fetal Brain Male	brain
48	chr4:107032400-107037000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:107032600-107034200	ZNF genes & repeats	Fetal Brain Female	brain
50	chr4:107032600-107034800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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