Variant report

Variant	rs73836989
Chromosome Location	chr4:107035768-107035769
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59605868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60910287	1.00[AMR][1000 genomes]
rs73836952	0.82[AFR][1000 genomes]
rs73836962	0.85[AFR][1000 genomes]
rs73836978	0.85[AFR][1000 genomes]
rs73836981	0.85[AFR][1000 genomes]
rs73836983	0.85[AFR][1000 genomes]
rs73836985	1.00[AMR][1000 genomes]
rs73836997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
2	chr4:107026800-107035800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:107030000-107035800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
6	chr4:107030200-107036200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
7	chr4:107030600-107035800	ZNF genes & repeats	Liver	Liver
8	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:107031000-107036200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr4:107031200-107035800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
11	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
12	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
13	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:107032200-107038400	Weak transcription	Fetal Brain Male	brain
17	chr4:107032400-107037000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:107032600-107039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:107033400-107035800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:107033400-107035800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr4:107033400-107039800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:107033600-107035800	Strong transcription	Fetal Stomach	stomach
24	chr4:107033600-107035800	Strong transcription	Pancreas	Pancrea
25	chr4:107033600-107037600	Strong transcription	Brain Hippocampus Middle	brain
26	chr4:107033600-107037800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:107033600-107038000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:107033600-107053400	Weak transcription	Osteobl	bone
30	chr4:107033800-107035800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:107033800-107035800	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr4:107033800-107035800	Strong transcription	Dnd41	blood
33	chr4:107033800-107036000	Strong transcription	Brain Anterior Caudate	brain
34	chr4:107033800-107036200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:107033800-107036800	Weak transcription	Brain Substantia Nigra	brain
36	chr4:107033800-107037800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr4:107033800-107038200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr4:107033800-107038400	Strong transcription	Primary T cells from cord blood	blood
39	chr4:107033800-107039000	Weak transcription	HSMMtube	muscle
40	chr4:107033800-107053400	Weak transcription	HSMM	muscle
41	chr4:107034000-107035800	Strong transcription	Fetal Lung	lung
42	chr4:107034000-107037800	Strong transcription	Adipose Nuclei	Adipose
43	chr4:107034000-107038000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr4:107034000-107038400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:107034200-107035800	Strong transcription	Pancreatic Islets	Pancreatic Islet
46	chr4:107034200-107035800	Strong transcription	Left Ventricle	heart
47	chr4:107034200-107035800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr4:107034200-107036800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:107034200-107036800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:107034200-107036800	Weak transcription	Fetal Kidney	kidney

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