Variant report

Variant	rs73836952
Chromosome Location	chr4:106959651-106959652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs55643705	0.83[AMR][1000 genomes]
rs55764348	1.00[AMR][1000 genomes]
rs56112627	1.00[AMR][1000 genomes]
rs56885542	1.00[AMR][1000 genomes]
rs57820715	1.00[AMR][1000 genomes]
rs57894506	1.00[AMR][1000 genomes]
rs58172732	1.00[AMR][1000 genomes]
rs59605868	0.88[AFR][1000 genomes]
rs60111429	1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs6839070	1.00[AMR][1000 genomes]
rs73836957	0.83[AMR][1000 genomes]
rs73836962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836974	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836989	0.82[AFR][1000 genomes]
rs73836993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838113	1.00[AMR][1000 genomes]
rs73838114	1.00[AMR][1000 genomes]
rs73838130	1.00[AMR][1000 genomes]
rs73838132	1.00[AMR][1000 genomes]
rs73838134	1.00[AMR][1000 genomes]
rs73838136	1.00[AMR][1000 genomes]
rs73838147	1.00[AMR][1000 genomes]
rs73838154	1.00[AMR][1000 genomes]
rs73838155	1.00[AMR][1000 genomes]
rs73838160	1.00[AMR][1000 genomes]
rs73838161	1.00[AMR][1000 genomes]
rs73838165	1.00[AMR][1000 genomes]
rs73838166	1.00[AMR][1000 genomes]
rs73838169	1.00[AMR][1000 genomes]
rs73838172	1.00[AMR][1000 genomes]
rs73838174	1.00[AMR][1000 genomes]
rs73838175	1.00[AMR][1000 genomes]
rs73838181	1.00[AMR][1000 genomes]
rs73838183	1.00[AMR][1000 genomes]
rs73838184	1.00[AMR][1000 genomes]
rs73838189	1.00[AMR][1000 genomes]
rs73838190	1.00[AMR][1000 genomes]
rs73838191	1.00[AMR][1000 genomes]
rs73838192	1.00[AMR][1000 genomes]
rs73838194	1.00[AMR][1000 genomes]
rs73838195	1.00[AMR][1000 genomes]
rs73838197	1.00[AMR][1000 genomes]
rs7693156	1.00[AMR][1000 genomes]
rs7698444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106955000-106969600	Weak transcription	NHLF	lung
2	chr4:106955200-106966600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:106956000-106960600	Weak transcription	Fetal Lung	lung
4	chr4:106956000-106961400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:106956000-106969800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:106956200-106960800	Weak transcription	NHDF-Ad	bronchial
7	chr4:106956200-106967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:106956200-106967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:106956200-106968200	Weak transcription	Fetal Stomach	stomach
10	chr4:106956200-106969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:106956200-106970000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:106956400-106966600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:106956600-106961600	Weak transcription	Psoas Muscle	Psoas
14	chr4:106956600-106969200	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:106956800-106970800	Weak transcription	HSMMtube	muscle
16	chr4:106958000-106966600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:106958400-106960600	Weak transcription	Fetal Heart	heart
18	chr4:106958400-106969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:106958400-106969400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:106959200-106969000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:106959200-106969800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:106959600-106969200	Weak transcription	Pancreas	Pancrea
23	chr4:106959600-106969600	Weak transcription	Fetal Kidney	kidney
24	chr4:106959600-106983400	Weak transcription	HepG2	liver

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