Variant report

Variant	rs73836957
Chromosome Location	chr4:106975537-106975538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106973955..106976797-chr4:106984969..106987253,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs55764348	0.83[AMR][1000 genomes]
rs56112627	0.83[AMR][1000 genomes]
rs56885542	0.83[AMR][1000 genomes]
rs57820715	0.83[AMR][1000 genomes]
rs57894506	0.83[AMR][1000 genomes]
rs58172732	0.83[AMR][1000 genomes]
rs60111429	0.83[AMR][1000 genomes]
rs60865730	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6839070	0.83[AMR][1000 genomes]
rs73836952	0.83[AMR][1000 genomes]
rs73836962	0.83[AMR][1000 genomes]
rs73836967	0.83[AMR][1000 genomes]
rs73836974	0.83[AMR][1000 genomes]
rs73836978	0.83[AMR][1000 genomes]
rs73836981	0.83[AMR][1000 genomes]
rs73836983	0.83[AMR][1000 genomes]
rs73836993	0.83[AMR][1000 genomes]
rs73838113	0.83[AMR][1000 genomes]
rs73838114	0.83[AMR][1000 genomes]
rs73838130	0.83[AMR][1000 genomes]
rs73838132	0.83[AMR][1000 genomes]
rs73838134	0.83[AMR][1000 genomes]
rs73838136	0.83[AMR][1000 genomes]
rs73838147	0.83[AMR][1000 genomes]
rs73838154	0.83[AMR][1000 genomes]
rs73838155	0.83[AMR][1000 genomes]
rs73838160	0.83[AMR][1000 genomes]
rs73838161	0.83[AMR][1000 genomes]
rs73838165	0.83[AMR][1000 genomes]
rs73838166	0.83[AMR][1000 genomes]
rs73838169	0.83[AMR][1000 genomes]
rs73838172	0.83[AMR][1000 genomes]
rs73838174	0.83[AMR][1000 genomes]
rs73838175	0.83[AMR][1000 genomes]
rs73838181	0.83[AMR][1000 genomes]
rs73838183	0.83[AMR][1000 genomes]
rs73838184	0.83[AMR][1000 genomes]
rs73838189	0.83[AMR][1000 genomes]
rs73838190	0.83[AMR][1000 genomes]
rs73838191	0.83[AMR][1000 genomes]
rs73838192	0.83[AMR][1000 genomes]
rs73838194	0.83[AMR][1000 genomes]
rs73838195	0.83[AMR][1000 genomes]
rs73838197	0.83[AMR][1000 genomes]
rs73839406	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73839408	0.83[AMR][1000 genomes]
rs73839409	0.83[AMR][1000 genomes]
rs7693156	0.83[AMR][1000 genomes]
rs7698444	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106959600-106983400	Weak transcription	HepG2	liver
2	chr4:106965800-106977600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:106967600-106983600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:106967600-106983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:106967800-106976400	Weak transcription	Psoas Muscle	Psoas
6	chr4:106967800-106984200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:106967800-106994600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:106968000-106977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:106968000-106977200	Weak transcription	Primary T cells from cord blood	blood
10	chr4:106968000-106984600	Weak transcription	Primary B cells from cord blood	blood
11	chr4:106969800-106978200	Weak transcription	Ovary	ovary
12	chr4:106970000-106977800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:106972200-106978200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:106972400-106997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:106973000-106982800	Weak transcription	Fetal Lung	lung
16	chr4:106975000-106978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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