Variant report

Variant	rs73838113
Chromosome Location	chr4:107077261-107077262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs55643705	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55764348	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55844204	1.00[AMR][1000 genomes]
rs56112627	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	1.00[AMR][1000 genomes]
rs56338587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56885542	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56894273	1.00[AMR][1000 genomes]
rs57820715	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57894506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58172732	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58494189	1.00[AMR][1000 genomes]
rs60111429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60393377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs6829433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839070	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836952	1.00[AMR][1000 genomes]
rs73836957	0.83[AMR][1000 genomes]
rs73836962	1.00[AMR][1000 genomes]
rs73836967	1.00[AMR][1000 genomes]
rs73836974	1.00[AMR][1000 genomes]
rs73836978	1.00[AMR][1000 genomes]
rs73836981	1.00[AMR][1000 genomes]
rs73836983	1.00[AMR][1000 genomes]
rs73836993	1.00[AMR][1000 genomes]
rs73836997	0.94[AFR][1000 genomes]
rs73838114	1.00[AMR][1000 genomes]
rs73838130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838132	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838155	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838184	1.00[AMR][1000 genomes]
rs73838189	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838191	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838192	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838194	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838195	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838197	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839406	1.00[AMR][1000 genomes]
rs73839408	1.00[AMR][1000 genomes]
rs73839409	1.00[AMR][1000 genomes]
rs73839414	1.00[AMR][1000 genomes]
rs73839415	1.00[AMR][1000 genomes]
rs73839417	1.00[AMR][1000 genomes]
rs73839418	1.00[AMR][1000 genomes]
rs73839425	1.00[AMR][1000 genomes]
rs73839427	1.00[AMR][1000 genomes]
rs73839428	1.00[AMR][1000 genomes]
rs73839429	1.00[AMR][1000 genomes]
rs73839432	1.00[AMR][1000 genomes]
rs73839434	1.00[AMR][1000 genomes]
rs73839435	1.00[AMR][1000 genomes]
rs73839436	1.00[AMR][1000 genomes]
rs73839437	1.00[AMR][1000 genomes]
rs73839438	1.00[AMR][1000 genomes]
rs73839439	1.00[AMR][1000 genomes]
rs73839442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839446	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839461	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691746	1.00[AMR][1000 genomes]
rs7693156	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:107053800-107080000	Weak transcription	Right Ventricle	heart
5	chr4:107053800-107083400	Weak transcription	HSMM	muscle
6	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
7	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:107054000-107077400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:107054000-107077400	Weak transcription	Aorta	Aorta
10	chr4:107054000-107077400	Weak transcription	Fetal Stomach	stomach
11	chr4:107054000-107077400	Weak transcription	Lung	lung
12	chr4:107054000-107081600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
15	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
17	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:107056200-107083400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:107065000-107083400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:107067400-107083600	Weak transcription	Fetal Kidney	kidney
22	chr4:107067800-107082600	Weak transcription	Fetal Brain Male	brain
23	chr4:107068000-107081200	Weak transcription	Psoas Muscle	Psoas
24	chr4:107068600-107083200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:107068600-107083600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:107069200-107078400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:107070200-107077400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:107070200-107077400	Weak transcription	HSMMtube	muscle
29	chr4:107070200-107083200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:107070200-107083400	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:107070400-107077600	Weak transcription	Adipose Nuclei	Adipose
32	chr4:107070400-107083200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:107070600-107084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr4:107071400-107083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:107071600-107077400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:107072000-107077400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:107072000-107083000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:107072200-107083400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:107073000-107082800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:107073000-107086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr4:107073400-107083000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:107073600-107077400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:107073800-107077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:107074000-107082600	Weak transcription	Fetal Brain Female	brain
46	chr4:107074200-107077400	Weak transcription	Esophagus	oesophagus
47	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
48	chr4:107074400-107083400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:107074800-107079400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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