Variant report

Variant	rs73839437
Chromosome Location	chr4:107261359-107261360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107255973..107258008-chr4:107260833..107262354,2	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11947830	1.00[AMR][1000 genomes]
rs28829295	1.00[AMR][1000 genomes]
rs55643705	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55764348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55844204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56112627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56338587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393563	1.00[AMR][1000 genomes]
rs56885542	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56894273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56907238	0.83[AMR][1000 genomes]
rs57683733	1.00[AMR][1000 genomes]
rs57820715	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57894506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58172732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214030	1.00[AMR][1000 genomes]
rs58494189	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59024949	1.00[AMR][1000 genomes]
rs59474187	1.00[AMR][1000 genomes]
rs60111429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60283634	1.00[AMR][1000 genomes]
rs60393377	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs61621018	0.83[AMR][1000 genomes]
rs6829433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883857	1.00[AMR][1000 genomes]
rs72883861	1.00[AMR][1000 genomes]
rs72883863	1.00[AMR][1000 genomes]
rs72883864	1.00[AMR][1000 genomes]
rs72883867	1.00[AMR][1000 genomes]
rs72883869	1.00[AMR][1000 genomes]
rs72885601	0.83[AMR][1000 genomes]
rs72887204	1.00[AMR][1000 genomes]
rs72887217	1.00[AMR][1000 genomes]
rs72887224	1.00[AMR][1000 genomes]
rs72887233	0.83[AMR][1000 genomes]
rs72887241	1.00[AMR][1000 genomes]
rs72887249	1.00[AMR][1000 genomes]
rs72887251	1.00[AMR][1000 genomes]
rs72887254	1.00[AMR][1000 genomes]
rs72889018	0.83[AMR][1000 genomes]
rs72889019	0.83[AMR][1000 genomes]
rs72889045	1.00[AMR][1000 genomes]
rs73836978	1.00[AMR][1000 genomes]
rs73836981	1.00[AMR][1000 genomes]
rs73836983	1.00[AMR][1000 genomes]
rs73836993	1.00[AMR][1000 genomes]
rs73837110	1.00[AMR][1000 genomes]
rs73837112	1.00[AMR][1000 genomes]
rs73837130	1.00[AMR][1000 genomes]
rs73837155	0.83[AMR][1000 genomes]
rs73838113	1.00[AMR][1000 genomes]
rs73838114	1.00[AMR][1000 genomes]
rs73838130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838132	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838166	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838174	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838184	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839406	1.00[AMR][1000 genomes]
rs73839408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839427	1.00[AMR][1000 genomes]
rs73839428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839442	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839446	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839451	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839454	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839461	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107243400-107271400	Weak transcription	Right Ventricle	heart
2	chr4:107245800-107261800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:107245800-107262200	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr4:107245800-107263000	Strong transcription	Dnd41	blood
5	chr4:107246000-107262000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:107246200-107262000	Strong transcription	NH-A	brain
7	chr4:107247000-107261800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr4:107247000-107262000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr4:107247000-107262200	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr4:107247000-107263000	Strong transcription	Fetal Intestine Large	intestine
11	chr4:107247000-107263600	Strong transcription	Fetal Thymus	thymus
12	chr4:107247000-107271400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr4:107247400-107262600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:107247600-107262400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:107247600-107263600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:107248000-107262000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:107248600-107261800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:107252200-107262400	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:107253200-107268200	Weak transcription	NHEK	skin
20	chr4:107255800-107262600	Strong transcription	Liver	Liver
21	chr4:107255800-107266800	Weak transcription	Stomach Mucosa	stomach
22	chr4:107256200-107266200	Weak transcription	HMEC	breast
23	chr4:107257200-107261800	Strong transcription	Ovary	ovary
24	chr4:107257600-107261800	Strong transcription	Brain Hippocampus Middle	brain
25	chr4:107257600-107262200	Strong transcription	Fetal Lung	lung
26	chr4:107257600-107262200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr4:107257800-107262200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:107257800-107262400	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr4:107258000-107262200	Strong transcription	Brain Anterior Caudate	brain
30	chr4:107258400-107261800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:107258400-107263000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:107258400-107263400	Weak transcription	Hela-S3	cervix
33	chr4:107258600-107262200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
35	chr4:107259000-107267600	Weak transcription	K562	blood
36	chr4:107259200-107262800	Strong transcription	Primary T cells from cord blood	blood
37	chr4:107259200-107265600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:107259400-107262400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:107259600-107261600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:107259600-107261600	Weak transcription	Fetal Kidney	kidney
41	chr4:107259600-107270600	Weak transcription	Brain Substantia Nigra	brain
42	chr4:107259800-107262000	Strong transcription	HSMMtube	muscle
43	chr4:107259800-107263200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:107259800-107263200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:107259800-107266600	Strong transcription	Primary B cells from cord blood	blood
46	chr4:107259800-107272400	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:107260000-107261400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:107260000-107262000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr4:107260000-107263000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr4:107260000-107272200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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