Variant report

Variant	rs72883857
Chromosome Location	chr4:107337416-107337417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr4:107337401-107337471	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107335618..107338970-chr4:107353446..107357718,3	K562	blood:

Variant related genes	Relation type
ENSG00000222333	TF binding region
ENSG00000249613	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11947830	1.00[AMR][1000 genomes]
rs28829295	1.00[AMR][1000 genomes]
rs55764348	1.00[AMR][1000 genomes]
rs55844204	1.00[AMR][1000 genomes]
rs56112627	1.00[AMR][1000 genomes]
rs56116680	1.00[AMR][1000 genomes]
rs56313516	1.00[AMR][1000 genomes]
rs56338587	1.00[AMR][1000 genomes]
rs56393563	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56885542	1.00[AMR][1000 genomes]
rs56894273	1.00[AMR][1000 genomes]
rs56907238	0.83[AMR][1000 genomes]
rs57683733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57820715	1.00[AMR][1000 genomes]
rs58172732	1.00[AMR][1000 genomes]
rs58214030	1.00[AMR][1000 genomes]
rs58494189	1.00[AMR][1000 genomes]
rs59024949	1.00[AMR][1000 genomes]
rs59474187	1.00[AMR][1000 genomes]
rs60283634	1.00[AMR][1000 genomes]
rs60393377	1.00[AMR][1000 genomes]
rs60865730	1.00[AMR][1000 genomes]
rs61621018	0.83[AMR][1000 genomes]
rs6829433	1.00[AMR][1000 genomes]
rs6839070	1.00[AMR][1000 genomes]
rs72883861	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883864	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885601	0.83[AMR][1000 genomes]
rs72887204	1.00[AMR][1000 genomes]
rs72887217	1.00[AMR][1000 genomes]
rs72887224	1.00[AMR][1000 genomes]
rs72887233	0.83[AMR][1000 genomes]
rs72887241	1.00[AMR][1000 genomes]
rs72887249	1.00[AMR][1000 genomes]
rs72887251	1.00[AMR][1000 genomes]
rs72887254	1.00[AMR][1000 genomes]
rs72889018	0.83[AMR][1000 genomes]
rs72889019	0.83[AMR][1000 genomes]
rs72889045	1.00[AMR][1000 genomes]
rs73837110	1.00[AMR][1000 genomes]
rs73837112	1.00[AMR][1000 genomes]
rs73837130	1.00[AMR][1000 genomes]
rs73837155	0.83[AMR][1000 genomes]
rs73838134	1.00[AMR][1000 genomes]
rs73838136	1.00[AMR][1000 genomes]
rs73838147	1.00[AMR][1000 genomes]
rs73838154	1.00[AMR][1000 genomes]
rs73838155	1.00[AMR][1000 genomes]
rs73838160	1.00[AMR][1000 genomes]
rs73838161	1.00[AMR][1000 genomes]
rs73838165	1.00[AMR][1000 genomes]
rs73838166	1.00[AMR][1000 genomes]
rs73838169	1.00[AMR][1000 genomes]
rs73838172	1.00[AMR][1000 genomes]
rs73838174	1.00[AMR][1000 genomes]
rs73838175	1.00[AMR][1000 genomes]
rs73838181	1.00[AMR][1000 genomes]
rs73838183	1.00[AMR][1000 genomes]
rs73838184	1.00[AMR][1000 genomes]
rs73838189	1.00[AMR][1000 genomes]
rs73838190	1.00[AMR][1000 genomes]
rs73838191	1.00[AMR][1000 genomes]
rs73838192	1.00[AMR][1000 genomes]
rs73838194	1.00[AMR][1000 genomes]
rs73838195	1.00[AMR][1000 genomes]
rs73838197	1.00[AMR][1000 genomes]
rs73839406	1.00[AMR][1000 genomes]
rs73839408	1.00[AMR][1000 genomes]
rs73839409	1.00[AMR][1000 genomes]
rs73839414	1.00[AMR][1000 genomes]
rs73839415	1.00[AMR][1000 genomes]
rs73839417	1.00[AMR][1000 genomes]
rs73839418	1.00[AMR][1000 genomes]
rs73839425	1.00[AMR][1000 genomes]
rs73839427	1.00[AMR][1000 genomes]
rs73839428	1.00[AMR][1000 genomes]
rs73839429	1.00[AMR][1000 genomes]
rs73839432	1.00[AMR][1000 genomes]
rs73839434	1.00[AMR][1000 genomes]
rs73839435	1.00[AMR][1000 genomes]
rs73839436	1.00[AMR][1000 genomes]
rs73839437	1.00[AMR][1000 genomes]
rs73839438	1.00[AMR][1000 genomes]
rs73839439	1.00[AMR][1000 genomes]
rs73839442	1.00[AMR][1000 genomes]
rs73839446	1.00[AMR][1000 genomes]
rs73839447	1.00[AMR][1000 genomes]
rs73839448	1.00[AMR][1000 genomes]
rs73839451	1.00[AMR][1000 genomes]
rs73839454	1.00[AMR][1000 genomes]
rs73839458	1.00[AMR][1000 genomes]
rs73839459	1.00[AMR][1000 genomes]
rs73839461	1.00[AMR][1000 genomes]
rs73839465	1.00[AMR][1000 genomes]
rs7691746	1.00[AMR][1000 genomes]
rs7693156	1.00[AMR][1000 genomes]
rs7698444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107332600-107339200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:107336000-107339000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:107336200-107341600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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