Variant report

Variant	rs28455960
Chromosome Location	chr8:95973797-95973798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95972771..95975327-chr8:95979134..95982751,4	MCF-7	breast:
2	chr8:95972569..95974816-chr8:95983655..95986247,2	MCF-7	breast:
3	chr8:95960008..95964622-chr8:95970124..95974538,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253878	Chromatin interaction
ENSG00000164938	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10087047	0.83[AFR][1000 genomes]
rs10089832	1.00[AFR][1000 genomes]
rs10090286	0.83[AFR][1000 genomes]
rs10090874	0.83[AFR][1000 genomes]
rs10095946	0.83[AFR][1000 genomes]
rs10216558	1.00[AFR][1000 genomes]
rs10216590	1.00[AFR][1000 genomes]
rs13439012	0.83[AFR][1000 genomes]
rs28394682	0.83[AFR][1000 genomes]
rs28403513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431001	1.00[AFR][1000 genomes]
rs28521724	1.00[AFR][1000 genomes]
rs28569283	1.00[AFR][1000 genomes]
rs28581770	0.83[AFR][1000 genomes]
rs28689859	0.83[AFR][1000 genomes]
rs28713284	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv818645	chr8:95967838-95974373	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95962200-95977800	Weak transcription	Hela-S3	cervix
2	chr8:95962800-95974200	Weak transcription	Gastric	stomach
3	chr8:95962800-95975800	Weak transcription	Right Ventricle	heart
4	chr8:95962800-95977000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:95962800-95979800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:95962800-95980200	Weak transcription	Ovary	ovary
7	chr8:95962800-95980600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:95963000-95975800	Weak transcription	Fetal Stomach	stomach
9	chr8:95963000-95980400	Weak transcription	HSMM	muscle
10	chr8:95963400-95974200	Weak transcription	Psoas Muscle	Psoas
11	chr8:95963600-95973800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:95963600-95974000	Weak transcription	Esophagus	oesophagus
13	chr8:95963600-95977800	Weak transcription	HUVEC	blood vessel
14	chr8:95963600-95979600	Weak transcription	A549	lung
15	chr8:95963800-95973800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:95963800-95979400	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:95964400-95973800	Weak transcription	Osteobl	bone
18	chr8:95964400-95976000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:95964400-95980000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:95964400-96002200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:95964600-95979400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:95964600-95980200	Weak transcription	Brain Substantia Nigra	brain
23	chr8:95964600-95980600	Weak transcription	Fetal Brain Female	brain
24	chr8:95964600-95992800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:95964800-95977400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:95964800-95980400	Weak transcription	Brain Anterior Caudate	brain
27	chr8:95964800-95981800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:95964800-95999000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:95964800-95999600	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:95964800-95999600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:95965000-95999600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:95966000-95986800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:95966000-95993000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:95966200-95975400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:95968800-95975400	Weak transcription	Spleen	Spleen
36	chr8:95970000-95974200	Weak transcription	Right Atrium	heart
37	chr8:95970600-95976000	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:95970600-96000800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:95971000-95977000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr8:95971000-95977800	Enhancers	Primary B cells from peripheral blood	blood
41	chr8:95971200-95973800	Enhancers	Fetal Intestine Small	intestine
42	chr8:95971200-95974600	Enhancers	Stomach Mucosa	stomach
43	chr8:95971400-95974400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr8:95971400-95974400	Enhancers	Fetal Intestine Large	intestine
45	chr8:95971400-95986800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr8:95971400-95987400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:95971600-95974600	Enhancers	Primary hematopoietic stem cells	blood
48	chr8:95971600-95974800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:95971600-95976800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:95971600-95979800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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