Variant report

Variant	rs28431001
Chromosome Location	chr8:96081349-96081350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:95960626..95963944-chr8:96078458..96081828,4	MCF-7	breast:
2	chr8:96076398..96079120-chr8:96079944..96081555,2	K562	blood:
3	chr8:96075113..96084115-chr8:96121900..96127897,13	MCF-7	breast:
4	chr17:58537718..58539624-chr8:96080020..96082836,2	MCF-7	breast:
5	chr8:95958396..95961086-chr8:96079770..96081416,2	MCF-7	breast:
6	chr8:96072280..96082057-chr8:96143406..96150431,26	MCF-7	breast:
7	chr8:96075220..96081525-chr8:96145144..96151005,16	MCF-7	breast:
8	chr8:96079160..96082761-chr8:96145231..96147675,3	K562	blood:
9	chr8:96079846..96082376-chr8:96152010..96153617,2	MCF-7	breast:
10	chr8:96079753..96081863-chr8:96250255..96253131,2	MCF-7	breast:
11	chr8:96077629..96090166-chr8:96105796..96116852,50	MCF-7	breast:
12	chr8:96079008..96081719-chr8:96123344..96126236,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TP53INP1-1	chr8:96081152-96081463	ENSG00000245080
2	lnc-TP53INP1-1	chr8:96079036-96081463	ENSG00000245080

No data

Variant related genes	Relation type
ENSG00000164938	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000253878	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10087047	0.83[AFR][1000 genomes]
rs10087335	1.00[AMR][1000 genomes]
rs10089832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10090286	0.83[AFR][1000 genomes]
rs10090874	0.83[AFR][1000 genomes]
rs10093849	1.00[AMR][1000 genomes]
rs10095946	0.83[AFR][1000 genomes]
rs10100231	1.00[AMR][1000 genomes]
rs10107484	1.00[AMR][1000 genomes]
rs10216558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334340	1.00[AMR][1000 genomes]
rs13438816	1.00[AMR][1000 genomes]
rs13439012	0.83[AFR][1000 genomes]
rs28370425	1.00[AMR][1000 genomes]
rs28394682	0.83[AFR][1000 genomes]
rs28403513	1.00[AFR][1000 genomes]
rs28421068	1.00[AMR][1000 genomes]
rs28454923	1.00[AMR][1000 genomes]
rs28455960	1.00[AFR][1000 genomes]
rs28504672	1.00[AMR][1000 genomes]
rs28521724	1.00[AFR][1000 genomes]
rs28569283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28581770	0.83[AFR][1000 genomes]
rs28645781	1.00[AMR][1000 genomes]
rs28689859	0.83[AFR][1000 genomes]
rs28713284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736358	1.00[AMR][1000 genomes]
rs73278574	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891205	chr8:96062601-96115476	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
5	esv12665	chr8:96079304-96081691	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1809201	chr8:96079879-96081568	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809397	chr8:96079879-96081568	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1809522	chr8:96079879-96081568	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1810707	chr8:96079879-96081568	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1811213	chr8:96079879-96081568	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1812870	chr8:96079879-96081568	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	esv1814274	chr8:96079879-96081568	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv1808302	chr8:96079879-96085479	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:96062000-96083800	Weak transcription	Fetal Brain Male	brain
3	chr8:96063800-96081400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:96068800-96082200	Weak transcription	Fetal Brain Female	brain
5	chr8:96071200-96084600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:96071200-96085000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:96071600-96083000	Weak transcription	Primary B cells from cord blood	blood
8	chr8:96071600-96084200	Weak transcription	GM12878-XiMat	blood
9	chr8:96071800-96083200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:96071800-96084800	Weak transcription	Thymus	Thymus
11	chr8:96072400-96085000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:96074800-96081400	Enhancers	Stomach Mucosa	stomach
13	chr8:96075200-96084800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:96076800-96081400	Enhancers	Placenta	Placenta
15	chr8:96077600-96084400	Weak transcription	Gastric	stomach
16	chr8:96078200-96081400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:96078200-96081600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:96078200-96081800	Enhancers	HMEC	breast
19	chr8:96078400-96081400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:96078600-96082000	Weak transcription	Aorta	Aorta
21	chr8:96078800-96081400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:96079200-96081800	Enhancers	NHEK	skin
23	chr8:96079400-96081400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:96079400-96081400	Weak transcription	HUVEC	blood vessel
25	chr8:96079400-96081800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:96079600-96081600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:96079800-96081400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:96079800-96081400	Enhancers	Brain Anterior Caudate	brain
29	chr8:96079800-96081400	Enhancers	Brain Cingulate Gyrus	brain
30	chr8:96079800-96081400	Enhancers	Brain Hippocampus Middle	brain
31	chr8:96079800-96081400	Enhancers	Brain Substantia Nigra	brain
32	chr8:96079800-96083200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:96080000-96081600	Enhancers	Colonic Mucosa	Colon
34	chr8:96080000-96081800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:96080000-96084800	Weak transcription	Spleen	Spleen
36	chr8:96080000-96085200	Weak transcription	Lung	lung
37	chr8:96080200-96081400	Enhancers	Brain Angular Gyrus	brain
38	chr8:96080200-96081400	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr8:96080200-96081600	Enhancers	HepG2	liver
40	chr8:96080200-96082000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:96080200-96083600	Weak transcription	Liver	Liver
42	chr8:96080200-96084400	Weak transcription	Fetal Thymus	thymus
43	chr8:96080200-96085000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr8:96080200-96085000	Weak transcription	Right Ventricle	heart
45	chr8:96080200-96085200	Weak transcription	Pancreas	Pancrea
46	chr8:96080200-96085200	Weak transcription	Right Atrium	heart
47	chr8:96080200-96101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:96080600-96083200	Enhancers	K562	blood
49	chr8:96081000-96081400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr8:96081000-96081600	Enhancers	A549	lung

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