Variant report

Variant	rs10100231
Chromosome Location	chr8:96192948-96192949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96192843..96194703-chr8:96238022..96240558,2	K562	blood:
2	chr8:96069296..96072093-chr8:96190510..96193088,2	MCF-7	breast:
3	chr8:96149528..96152300-chr8:96192170..96194138,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087335	1.00[AMR][1000 genomes]
rs10089832	1.00[AMR][1000 genomes]
rs10093849	1.00[AMR][1000 genomes]
rs10107484	1.00[AMR][1000 genomes]
rs10216558	1.00[AMR][1000 genomes]
rs10216590	1.00[AMR][1000 genomes]
rs12334340	1.00[AMR][1000 genomes]
rs13438816	1.00[AMR][1000 genomes]
rs28370425	1.00[AMR][1000 genomes]
rs28421068	1.00[AMR][1000 genomes]
rs28428932	1.00[AMR][1000 genomes]
rs28431001	1.00[AMR][1000 genomes]
rs28454923	1.00[AMR][1000 genomes]
rs28504672	1.00[AMR][1000 genomes]
rs28569283	1.00[AMR][1000 genomes]
rs28645781	1.00[AMR][1000 genomes]
rs28713284	1.00[AMR][1000 genomes]
rs28736358	1.00[AMR][1000 genomes]
rs73278574	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96187200-96194000	Weak transcription	Pancreas	Pancrea
2	chr8:96187800-96193200	Weak transcription	K562	blood
3	chr8:96188000-96197000	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:96188400-96193200	Weak transcription	GM12878-XiMat	blood
5	chr8:96189200-96193600	Enhancers	Primary B cells from cord blood	blood
6	chr8:96189200-96193800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:96190200-96195000	Enhancers	Fetal Thymus	thymus
8	chr8:96190400-96193400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:96190600-96193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:96191000-96195000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:96191200-96193000	Enhancers	Fetal Brain Male	brain
12	chr8:96191200-96195000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:96191400-96193000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:96191400-96193200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:96191400-96193400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:96191400-96193400	Weak transcription	Thymus	Thymus
17	chr8:96191400-96193600	Weak transcription	Lung	lung
18	chr8:96191400-96193600	Enhancers	HepG2	liver
19	chr8:96191400-96194200	Weak transcription	Placenta	Placenta
20	chr8:96191600-96202200	Weak transcription	Aorta	Aorta
21	chr8:96192400-96193400	Weak transcription	Left Ventricle	heart
22	chr8:96192400-96193600	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:96192400-96193600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:96192600-96194200	Enhancers	Adipose Nuclei	Adipose
25	chr8:96192800-96193000	Enhancers	Spleen	Spleen

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