Variant report

Variant	rs10087335
Chromosome Location	chr8:96284988-96284989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:96284920-96285070	NHEK	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96280353..96283480-chr8:96283563..96287896,7	K562	blood:
2	chr8:95907099..95910081-chr8:96279389..96285203,6	K562	blood:

Variant related genes	Relation type
C8orf37	TF binding region
ENSG00000175305	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10100231	1.00[AMR][1000 genomes]
rs10107484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10113766	1.00[AMR][1000 genomes]
rs10216558	1.00[AMR][1000 genomes]
rs10216590	1.00[AMR][1000 genomes]
rs12334340	1.00[AMR][1000 genomes]
rs13438816	1.00[AMR][1000 genomes]
rs28421068	1.00[AMR][1000 genomes]
rs28428932	1.00[AMR][1000 genomes]
rs28431001	1.00[AMR][1000 genomes]
rs28454923	1.00[AMR][1000 genomes]
rs28504672	1.00[AMR][1000 genomes]
rs28645781	1.00[AMR][1000 genomes]
rs28736358	1.00[AMR][1000 genomes]
rs73270420	1.00[AMR][1000 genomes]
rs73278574	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96282400-96285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96282800-96285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:96282800-96286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:96283000-96285400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:96283000-96285600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:96283000-96285600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:96283000-96285600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:96283000-96286000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:96283200-96285800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:96283200-96286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:96283400-96285000	Weak transcription	HepG2	liver
12	chr8:96283400-96285200	Weak transcription	Small Intestine	intestine
13	chr8:96283400-96285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:96283400-96286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:96283400-96286000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:96283600-96285400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:96283600-96285600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:96283600-96285800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:96283600-96286000	Weak transcription	Fetal Heart	heart
20	chr8:96284600-96286800	Enhancers	Placenta	Placenta

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