Variant report

Variant	rs10107484
Chromosome Location	chr8:96275895-96275896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96267529..96269819-chr8:96274003..96276020,2	MCF-7	breast:
2	chr8:96275452..96279040-chr8:96279400..96281500,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10087335	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089832	1.00[AMR][1000 genomes]
rs10100231	1.00[AMR][1000 genomes]
rs10113766	1.00[AMR][1000 genomes]
rs10216558	1.00[AMR][1000 genomes]
rs10216590	1.00[AMR][1000 genomes]
rs12334340	1.00[AMR][1000 genomes]
rs13438816	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421068	1.00[AMR][1000 genomes]
rs28428932	1.00[AMR][1000 genomes]
rs28431001	1.00[AMR][1000 genomes]
rs28454923	1.00[AMR][1000 genomes]
rs28504672	1.00[AMR][1000 genomes]
rs28569283	1.00[AMR][1000 genomes]
rs28645781	1.00[AMR][1000 genomes]
rs28736358	1.00[AMR][1000 genomes]
rs73270420	1.00[AMR][1000 genomes]
rs73278574	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a
2	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
4	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
5	chr8:96249000-96280800	Weak transcription	Gastric	stomach
6	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
7	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
8	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
9	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
10	chr8:96256800-96280400	Weak transcription	Lung	lung
11	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
14	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
18	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
21	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
26	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
27	chr8:96262600-96280400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:96263200-96280400	Weak transcription	Placenta	Placenta
29	chr8:96264200-96276800	Weak transcription	Primary T cells from cord blood	blood
30	chr8:96264200-96280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:96264200-96280400	Weak transcription	Liver	Liver
32	chr8:96264200-96280400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:96264200-96280400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:96264400-96280000	Weak transcription	Brain Angular Gyrus	brain
35	chr8:96266000-96280400	Weak transcription	Fetal Intestine Small	intestine
36	chr8:96267000-96280400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr8:96268800-96276200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr8:96268800-96280400	Weak transcription	Thymus	Thymus
39	chr8:96269200-96280400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:96269400-96280600	Weak transcription	HSMMtube	muscle
41	chr8:96269600-96280400	Weak transcription	GM12878-XiMat	blood
42	chr8:96271000-96280400	Weak transcription	Fetal Muscle Leg	muscle
43	chr8:96271800-96280400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:96271800-96280400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:96271800-96280400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr8:96272000-96280200	Weak transcription	A549	lung
47	chr8:96272000-96280400	Weak transcription	Fetal Brain Female	brain
48	chr8:96272000-96280600	Weak transcription	Aorta	Aorta
49	chr8:96272000-96280600	Weak transcription	Ovary	ovary
50	chr8:96272200-96280200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links