Variant report

Variant	rs28465445
Chromosome Location	chr4:15476919-15476920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15475920..15478825-chr4:15482712..15485003,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10032808	0.83[ASN][1000 genomes]
rs11942186	0.91[ASN][1000 genomes]
rs11942959	0.93[ASN][1000 genomes]
rs13353624	0.95[ASN][1000 genomes]
rs1861049	0.95[ASN][1000 genomes]
rs1861050	0.95[ASN][1000 genomes]
rs2192359	0.83[ASN][1000 genomes]
rs2192360	0.83[ASN][1000 genomes]
rs2192361	0.83[ASN][1000 genomes]
rs2192362	0.85[ASN][1000 genomes]
rs28405315	0.85[ASN][1000 genomes]
rs28448602	0.92[ASN][1000 genomes]
rs28697056	0.81[ASN][1000 genomes]
rs3822297	0.83[ASN][1000 genomes]
rs4698383	0.91[ASN][1000 genomes]
rs4698384	0.91[ASN][1000 genomes]
rs61170754	0.94[ASN][1000 genomes]
rs6836616	0.95[ASN][1000 genomes]
rs971490	0.91[ASN][1000 genomes]
rs9998722	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15471800-15480800	Weak transcription	Pancreas	Pancrea
2	chr4:15471800-15481000	Weak transcription	Spleen	Spleen
3	chr4:15472200-15477800	Weak transcription	Left Ventricle	heart
4	chr4:15472200-15480600	Weak transcription	HSMM	muscle
5	chr4:15472200-15480800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:15472200-15480800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:15472200-15480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:15472200-15480800	Weak transcription	Fetal Intestine Large	intestine
9	chr4:15472200-15480800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:15472200-15480800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:15472200-15480800	Weak transcription	Lung	lung
12	chr4:15472600-15477800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:15472600-15480800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:15472800-15480800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:15472800-15480800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:15472800-15480800	Weak transcription	NHLF	lung
17	chr4:15473000-15477200	Weak transcription	Ovary	ovary
18	chr4:15473000-15477800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:15473000-15480400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:15473000-15480800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:15473000-15480800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:15473000-15480800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:15473000-15480800	Weak transcription	Fetal Kidney	kidney
24	chr4:15473000-15480800	Weak transcription	Psoas Muscle	Psoas
25	chr4:15473200-15477200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:15473200-15477400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:15473200-15477600	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:15473200-15477800	Weak transcription	Adipose Nuclei	Adipose
29	chr4:15473200-15477800	Weak transcription	Aorta	Aorta
30	chr4:15473200-15480800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:15473200-15480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:15473200-15480800	Weak transcription	Fetal Heart	heart
33	chr4:15473200-15480800	Weak transcription	Fetal Lung	lung
34	chr4:15473200-15480800	Weak transcription	Fetal Stomach	stomach
35	chr4:15473200-15480800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:15474000-15480800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:15475400-15480400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:15475400-15480800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:15475600-15480400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr4:15475600-15480400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:15475800-15477200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr4:15475800-15477600	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:15476000-15477600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:15476000-15480400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:15476000-15480800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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