Variant report

Variant	rs9998722
Chromosome Location	chr4:15443374-15443375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10004540	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10032808	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942186	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11942959	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11946436	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13353624	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1468737	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16891867	0.88[ASN][1000 genomes]
rs1861045	0.88[ASN][1000 genomes]
rs1861046	0.88[ASN][1000 genomes]
rs1861049	0.87[ASN][1000 genomes]
rs1861050	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2192359	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192360	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192361	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192362	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28405315	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28448602	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28465445	0.85[ASN][1000 genomes]
rs28517424	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28697056	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822297	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4698107	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4698108	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4698380	0.87[ASN][1000 genomes]
rs4698381	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4698383	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4698384	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60487386	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61170754	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6814988	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6836616	0.87[ASN][1000 genomes]
rs6837765	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs723299	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7656974	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661435	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs971490	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15431400-15443800	Weak transcription	Aorta	Aorta
2	chr4:15438200-15452400	Weak transcription	Left Ventricle	heart
3	chr4:15438200-15452600	Weak transcription	Fetal Kidney	kidney
4	chr4:15438400-15443800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:15438400-15444000	Weak transcription	Ovary	ovary
6	chr4:15438400-15444400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:15438400-15446200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:15438600-15444000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:15438800-15453000	Weak transcription	Fetal Lung	lung
11	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:15442400-15443600	Strong transcription	Fetal Stomach	stomach

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