Variant report

Variant	rs28517424
Chromosome Location	chr4:15417853-15417854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10004540	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032808	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11942186	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11942959	0.84[ASN][1000 genomes]
rs11946436	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13353624	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1468737	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891867	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861045	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861046	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861049	0.81[ASN][1000 genomes]
rs1861050	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2192359	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192360	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192361	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192362	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28405315	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28448602	0.85[ASN][1000 genomes]
rs28697056	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822297	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698105	0.85[ASN][1000 genomes]
rs4698106	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4698107	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698108	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698380	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4698381	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698383	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4698384	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60487386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61170754	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6814988	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836616	0.81[ASN][1000 genomes]
rs6837765	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723299	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656974	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661435	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971490	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9998722	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
3	chr4:15411200-15419800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:15411400-15418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:15411400-15418600	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:15412400-15421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:15412600-15421800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:15412800-15420800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:15413000-15419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:15413200-15418000	Weak transcription	Right Atrium	heart
11	chr4:15413600-15418000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:15413600-15418000	Weak transcription	Spleen	Spleen
13	chr4:15416200-15418000	Weak transcription	Aorta	Aorta
14	chr4:15416400-15418000	Weak transcription	Fetal Thymus	thymus
15	chr4:15416400-15419000	Weak transcription	Adipose Nuclei	Adipose
16	chr4:15416400-15419400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:15416600-15418200	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:15416600-15419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:15416800-15418000	Weak transcription	Fetal Heart	heart
20	chr4:15416800-15418000	Weak transcription	Ovary	ovary
21	chr4:15416800-15418200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:15416800-15421800	Weak transcription	NHLF	lung
23	chr4:15416800-15422000	Weak transcription	Brain Substantia Nigra	brain
24	chr4:15416800-15422000	Weak transcription	HSMMtube	muscle
25	chr4:15416800-15422000	Weak transcription	NH-A	brain
26	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
27	chr4:15417000-15418000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:15417000-15418800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:15417000-15418800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:15417000-15419200	Weak transcription	Fetal Stomach	stomach
31	chr4:15417000-15421800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:15417000-15421800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:15417000-15421800	Weak transcription	HSMM	muscle
34	chr4:15417000-15421800	Weak transcription	Osteobl	bone
35	chr4:15417600-15418000	Enhancers	Primary B cells from peripheral blood	blood
36	chr4:15417600-15418600	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr4:15417600-15418600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr4:15417800-15418600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:15417800-15418600	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr4:15417800-15418600	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr4:15417800-15418600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr4:15417800-15420400	Enhancers	Stomach Smooth Muscle	stomach

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