Variant report

Variant	rs4698105
Chromosome Location	chr4:15396053-15396054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15386891..15389601-chr4:15395549..15397973,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10004540	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10032808	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11946436	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1468737	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16891867	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861045	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861046	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2192359	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2192360	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2192361	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2192362	0.82[EUR][1000 genomes]
rs28405315	0.82[EUR][1000 genomes]
rs28517424	0.85[ASN][1000 genomes]
rs28697056	0.82[EUR][1000 genomes]
rs3822297	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4698106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698107	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698108	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698380	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698381	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60487386	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6814988	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6837765	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs723299	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656974	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7661435	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388000-15396600	Weak transcription	Ovary	ovary
4	chr4:15388200-15400000	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
6	chr4:15394200-15397600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:15394200-15397800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:15394200-15400000	Weak transcription	Lung	lung
9	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
10	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:15396000-15397800	Weak transcription	Aorta	Aorta
12	chr4:15396000-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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