Variant report

Variant	rs1861045
Chromosome Location	chr4:15397871-15397872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:15232848..15233383-chr4:15397538..15398458,2	K562	blood:
2	chr4:15240072..15240605-chr4:15397706..15398291,2	K562	blood:
3	chr4:15396902..15399752-chr4:15401577..15403886,2	K562	blood:
4	chr4:15329709..15330339-chr4:15397138..15397947,2	MCF-7	breast:
5	chr4:15240032..15240900-chr4:15397622..15398796,7	MCF-7	breast:
6	chr4:15386891..15389601-chr4:15395549..15397973,3	K562	blood:
7	chr4:15232817..15233793-chr4:15397547..15398050,2	MCF-7	breast:
8	chr4:14958119..14958621-chr4:15397558..15398278,2	K562	blood:
9	chr4:15397612..15398426-chr4:15651683..15652206,2	K562	blood:
10	chr4:15239996..15241022-chr4:15397404..15398151,4	MCF-7	breast:

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10004540	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10032808	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11942186	0.83[ASN][1000 genomes]
rs11942959	0.81[ASN][1000 genomes]
rs11946436	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468737	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16891867	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192359	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2192360	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2192361	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2192362	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28405315	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28448602	0.82[ASN][1000 genomes]
rs28517424	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28697056	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822297	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4698105	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698106	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698107	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4698108	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4698380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698381	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4698383	0.83[ASN][1000 genomes]
rs4698384	0.83[ASN][1000 genomes]
rs60487386	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814988	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6837765	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs723299	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656974	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7661435	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs971490	0.83[ASN][1000 genomes]
rs9998722	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388200-15400000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
5	chr4:15394200-15400000	Weak transcription	Lung	lung
6	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
7	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:15396000-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:15396800-15398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:15396800-15398000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:15396800-15398000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
13	chr4:15397200-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:15397600-15398000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:15397600-15398000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:15397600-15399000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:15397600-15399400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:15397600-15399600	Weak transcription	Ovary	ovary
19	chr4:15397600-15399800	Weak transcription	Osteobl	bone
20	chr4:15397600-15400600	Weak transcription	Fetal Kidney	kidney
21	chr4:15397800-15398000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:15397800-15398000	Enhancers	Aorta	Aorta
23	chr4:15397800-15398200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:15397800-15398400	Enhancers	Primary B cells from peripheral blood	blood

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