Variant report

Variant	rs4698107
Chromosome Location	chr4:15414012-15414013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10004540	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032808	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516286	1.00[CEU][hapmap]
rs11942186	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11942959	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11946436	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13353624	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1468737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891867	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861045	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861046	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861049	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1861050	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2080176	0.83[JPT][hapmap]
rs2080177	0.83[JPT][hapmap]
rs2192359	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192360	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192361	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2192362	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28405315	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28448602	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28517424	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28697056	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822297	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4140933	0.83[JPT][hapmap]
rs4698105	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698106	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698112	0.83[JPT][hapmap]
rs4698380	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4698381	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698383	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698384	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60487386	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61170754	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6810461	0.83[JPT][hapmap]
rs6814988	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836616	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6837765	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723299	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656974	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661435	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971490	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9998686	0.83[JPT][hapmap]
rs9998722	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15404000-15414800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:15404000-15415600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:15405400-15416000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:15406400-15414800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
7	chr4:15411000-15417200	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:15411200-15415000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr4:15411200-15415400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:15411200-15419800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:15411400-15418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:15411400-15418600	Enhancers	Primary hematopoietic stem cells	blood
13	chr4:15411600-15416000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:15411800-15416800	Weak transcription	Small Intestine	intestine
15	chr4:15412200-15416400	Enhancers	Fetal Thymus	thymus
16	chr4:15412400-15416400	Enhancers	Thymus	Thymus
17	chr4:15412400-15421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:15412600-15415000	Weak transcription	NHLF	lung
19	chr4:15412600-15415200	Weak transcription	NHDF-Ad	bronchial
20	chr4:15412600-15421800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:15412800-15414800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:15412800-15415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:15412800-15416000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:15412800-15416400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:15412800-15416800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr4:15412800-15420800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:15413000-15414200	Enhancers	Primary B cells from cord blood	blood
28	chr4:15413000-15414800	Enhancers	Dnd41	blood
29	chr4:15413000-15415000	Weak transcription	Fetal Lung	lung
30	chr4:15413000-15416400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr4:15413000-15419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr4:15413200-15414400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:15413200-15414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:15413200-15414800	Weak transcription	Adipose Nuclei	Adipose
35	chr4:15413200-15414800	Weak transcription	Ovary	ovary
36	chr4:15413200-15415200	Weak transcription	Liver	Liver
37	chr4:15413200-15416000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:15413200-15416600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr4:15413200-15416800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr4:15413200-15418000	Weak transcription	Right Atrium	heart
41	chr4:15413400-15414600	Weak transcription	Fetal Stomach	stomach
42	chr4:15413400-15414800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr4:15413400-15415000	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:15413400-15415600	Weak transcription	Aorta	Aorta
45	chr4:15413400-15416000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:15413400-15416800	Enhancers	Primary T cells from cord blood	blood
47	chr4:15413600-15414800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:15413600-15415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:15413600-15418000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:15413600-15418000	Weak transcription	Spleen	Spleen

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