Variant report

Variant	rs28697056
Chromosome Location	chr4:15448551-15448552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004540	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10032808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942186	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11942959	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11946436	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13353624	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1468737	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16891867	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861045	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861046	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861049	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1861050	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192359	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192360	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192361	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28405315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28448602	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28465445	0.81[ASN][1000 genomes]
rs28517424	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822297	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4698105	0.82[EUR][1000 genomes]
rs4698106	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4698107	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4698108	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4698380	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698381	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4698383	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4698384	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60487386	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61170754	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6814988	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6836616	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6837765	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs723299	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73235019	0.81[AMR][1000 genomes]
rs7656974	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661435	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs971490	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9998722	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438200-15452400	Weak transcription	Left Ventricle	heart
2	chr4:15438200-15452600	Weak transcription	Fetal Kidney	kidney
3	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:15438800-15453000	Weak transcription	Fetal Lung	lung
5	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:15443800-15452000	Weak transcription	Primary B cells from cord blood	blood
7	chr4:15444200-15452400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:15444400-15452400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:15444400-15452400	Weak transcription	Fetal Stomach	stomach
10	chr4:15445600-15452200	Weak transcription	Aorta	Aorta
11	chr4:15446200-15452400	Weak transcription	Ovary	ovary
12	chr4:15446600-15452400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:15447000-15451800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:15447000-15452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:15447000-15452400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:15447200-15452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:15447600-15452400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:15447800-15452800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:15448400-15458800	Weak transcription	Primary T cells from cord blood	blood

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