Variant report

Variant	rs28465594
Chromosome Location	chr4:173954643-173954644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10030102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28420300	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28580655	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28588330	1.00[EUR][1000 genomes]
rs28630463	1.00[EUR][1000 genomes]
rs6832624	1.00[EUR][1000 genomes]
rs72988619	1.00[EUR][1000 genomes]
rs9998464	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:173950400-173959400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:173950800-173958000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:173951200-173960400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:173951600-173959200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:173953200-173957800	Weak transcription	Stomach Mucosa	stomach
7	chr4:173954400-173955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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