Variant report

Variant	rs28580655
Chromosome Location	chr4:173939869-173939870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10030102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28420300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465594	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28588330	1.00[EUR][1000 genomes]
rs28630463	1.00[EUR][1000 genomes]
rs6832624	1.00[EUR][1000 genomes]
rs72988619	1.00[EUR][1000 genomes]
rs9998464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:173935600-173940000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:173936000-173941000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:173936400-173945000	Weak transcription	HSMM	muscle
5	chr4:173936600-173942400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:173937400-173941000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:173937600-173942400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:173937600-173944200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:173938800-173940800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:173939200-173940800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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