Variant report

Variant	rs72988619
Chromosome Location	chr4:173992373-173992374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10030102	1.00[EUR][1000 genomes]
rs28420300	1.00[EUR][1000 genomes]
rs28465594	1.00[EUR][1000 genomes]
rs28580655	1.00[EUR][1000 genomes]
rs28588330	1.00[EUR][1000 genomes]
rs28630463	1.00[EUR][1000 genomes]
rs6832624	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173991400-173992400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:173991600-173992800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:173991800-173992600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:173992000-173992600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:173992200-173993200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:173992200-173994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:173992200-173994200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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