Variant report

Variant	rs28475884
Chromosome Location	chr15:92417233-92417234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56079643	1.00[EUR][1000 genomes]
rs56880057	0.86[EUR][1000 genomes]
rs60495981	0.86[EUR][1000 genomes]
rs72750051	1.00[EUR][1000 genomes]
rs72750053	0.84[EUR][1000 genomes]
rs72750054	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92409600-92430800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
4	chr15:92411200-92418400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:92411200-92418400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:92411200-92421800	Weak transcription	Fetal Brain Female	brain
7	chr15:92411200-92430600	Weak transcription	Colonic Mucosa	Colon
8	chr15:92411200-92431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:92411600-92430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:92411600-92430600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:92411800-92419600	Weak transcription	NHLF	lung
12	chr15:92412000-92421600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:92412000-92425200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:92412000-92425800	Weak transcription	Lung	lung
15	chr15:92412000-92426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:92413000-92422200	Weak transcription	Adipose Nuclei	Adipose
17	chr15:92413200-92417600	Weak transcription	Right Atrium	heart
18	chr15:92413400-92421800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:92414400-92421200	Weak transcription	Fetal Brain Male	brain
20	chr15:92414600-92418600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:92414800-92417600	Weak transcription	Primary T cells from cord blood	blood
22	chr15:92414800-92417600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:92414800-92417600	Weak transcription	Spleen	Spleen
24	chr15:92414800-92417800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:92414800-92418200	Weak transcription	Left Ventricle	heart
26	chr15:92414800-92418400	Weak transcription	Right Ventricle	heart
27	chr15:92414800-92418800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:92414800-92424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr15:92414800-92424200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:92414800-92424200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:92414800-92425200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:92414800-92429600	Weak transcription	Ovary	ovary
33	chr15:92415000-92417600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:92415000-92417800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:92415000-92417800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:92415000-92417800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:92415000-92424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:92415000-92424200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:92415000-92432600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:92415400-92417600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:92415400-92417600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:92415400-92417800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:92416200-92417600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:92416200-92421400	Weak transcription	Pancreas	Pancrea
45	chr15:92416200-92428400	Weak transcription	Esophagus	oesophagus
46	chr15:92416400-92418200	Weak transcription	Fetal Heart	heart
47	chr15:92416400-92421600	Weak transcription	Brain Angular Gyrus	brain
48	chr15:92416400-92428000	Weak transcription	Fetal Stomach	stomach
49	chr15:92416600-92417600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr15:92416600-92417800	Weak transcription	Brain Hippocampus Middle	brain

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