Variant report

Variant	rs72750053
Chromosome Location	chr15:92418760-92418761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17596562	1.00[AFR][1000 genomes]
rs28475884	0.84[EUR][1000 genomes]
rs4078179	0.85[AMR][1000 genomes]
rs4561447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638463	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55653850	1.00[AFR][1000 genomes]
rs55761412	1.00[AFR][1000 genomes]
rs55767000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55772252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55888073	1.00[AFR][1000 genomes]
rs55908621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55919613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55934923	1.00[AFR][1000 genomes]
rs56079643	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56168257	1.00[AFR][1000 genomes]
rs56277940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56292826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56880057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60495981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61742322	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72750051	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72750054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750072	0.96[AMR][1000 genomes]
rs72750075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750089	0.85[AMR][1000 genomes]
rs72750091	0.85[AMR][1000 genomes]
rs72750094	0.85[AMR][1000 genomes]
rs72750095	0.85[AMR][1000 genomes]
rs72750097	0.85[AMR][1000 genomes]
rs72750100	0.85[AMR][1000 genomes]
rs72750101	0.85[AMR][1000 genomes]
rs72754094	1.00[AFR][1000 genomes]
rs72755606	1.00[AFR][1000 genomes]
rs72755608	1.00[AFR][1000 genomes]
rs72755613	1.00[AFR][1000 genomes]
rs72755617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92409600-92430800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
4	chr15:92411200-92421800	Weak transcription	Fetal Brain Female	brain
5	chr15:92411200-92430600	Weak transcription	Colonic Mucosa	Colon
6	chr15:92411200-92431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:92411600-92430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:92411600-92430600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:92411800-92419600	Weak transcription	NHLF	lung
10	chr15:92412000-92421600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:92412000-92425200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:92412000-92425800	Weak transcription	Lung	lung
13	chr15:92412000-92426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:92413000-92422200	Weak transcription	Adipose Nuclei	Adipose
15	chr15:92413400-92421800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:92414400-92421200	Weak transcription	Fetal Brain Male	brain
17	chr15:92414800-92418800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:92414800-92424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:92414800-92424200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:92414800-92424200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:92414800-92425200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:92414800-92429600	Weak transcription	Ovary	ovary
23	chr15:92415000-92424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:92415000-92424200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:92415000-92432600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:92416200-92421400	Weak transcription	Pancreas	Pancrea
27	chr15:92416200-92428400	Weak transcription	Esophagus	oesophagus
28	chr15:92416400-92421600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:92416400-92428000	Weak transcription	Fetal Stomach	stomach
30	chr15:92416600-92424000	Weak transcription	Brain Anterior Caudate	brain
31	chr15:92416600-92431000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:92416800-92418800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:92416800-92419000	Weak transcription	Fetal Lung	lung
34	chr15:92416800-92430600	Weak transcription	HMEC	breast
35	chr15:92416800-92431000	Weak transcription	NHEK	skin
36	chr15:92417000-92421400	Weak transcription	Brain Substantia Nigra	brain
37	chr15:92417600-92419400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr15:92417600-92421600	Enhancers	Right Atrium	heart
39	chr15:92417800-92418800	Enhancers	Brain Cingulate Gyrus	brain
40	chr15:92417800-92419000	Enhancers	Brain Hippocampus Middle	brain
41	chr15:92418000-92419400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:92418000-92420800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:92418000-92435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:92418200-92419000	Enhancers	Left Ventricle	heart
45	chr15:92418200-92419600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:92418200-92425200	Enhancers	Fetal Heart	heart
47	chr15:92418400-92418800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:92418400-92419000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:92418400-92419000	Enhancers	Fetal Intestine Large	intestine
50	chr15:92418400-92420200	Enhancers	H1 Cell Line	embryonic stem cell

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