Variant report

Variant	rs72750072
Chromosome Location	chr15:92443422-92443423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92442954..92444476-chr15:92444730..92447599,2	MCF-7	breast:
2	chr15:92436741..92440522-chr15:92441397..92443466,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11853482	0.97[EUR][1000 genomes]
rs4078179	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561447	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638463	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767000	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	0.81[EUR][1000 genomes]
rs55772252	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879752	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55908621	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55919613	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56040702	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56079643	0.92[AMR][1000 genomes]
rs56079731	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56277940	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56292826	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358895	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388730	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56880057	0.96[AMR][1000 genomes]
rs60495981	0.96[AMR][1000 genomes]
rs61742322	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750051	0.92[AMR][1000 genomes]
rs72750053	0.96[AMR][1000 genomes]
rs72750054	0.96[AMR][1000 genomes]
rs72750059	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750064	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750065	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750067	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750075	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750081	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750089	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750091	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750094	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750095	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750097	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750100	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750101	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751903	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751904	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751905	0.81[EUR][1000 genomes]
rs72751967	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
2	chr15:92428800-92445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:92432600-92447400	Weak transcription	Stomach Mucosa	stomach
4	chr15:92433000-92446400	Weak transcription	Gastric	stomach
5	chr15:92433000-92458400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:92435600-92444800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:92438000-92459000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:92438200-92447200	Weak transcription	Ovary	ovary
9	chr15:92438400-92445000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:92438600-92444600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:92438800-92445000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:92438800-92445400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:92438800-92455200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:92439000-92446400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:92439000-92453600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:92439400-92444000	Enhancers	Brain Substantia Nigra	brain
17	chr15:92439600-92444600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:92440800-92443600	Enhancers	Brain Hippocampus Middle	brain
19	chr15:92441200-92451000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:92441200-92451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:92441400-92451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:92441600-92444400	Weak transcription	Fetal Brain Female	brain
23	chr15:92442000-92451000	Weak transcription	Esophagus	oesophagus
24	chr15:92442600-92446200	Weak transcription	Right Ventricle	heart
25	chr15:92442600-92446800	Weak transcription	Right Atrium	heart
26	chr15:92442600-92447200	Weak transcription	Left Ventricle	heart
27	chr15:92442600-92454200	Weak transcription	Lung	lung
28	chr15:92442800-92445000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:92442800-92447800	Weak transcription	Fetal Heart	heart
30	chr15:92443200-92443600	Enhancers	Brain Cingulate Gyrus	brain

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