Variant report

Variant	rs56079731
Chromosome Location	chr15:92464119-92464120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11853482	0.84[EUR][1000 genomes]
rs4078179	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638463	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767000	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55772252	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55792858	0.95[EUR][1000 genomes]
rs55829293	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55879752	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55908621	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040702	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56292826	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742322	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165108	0.86[EUR][1000 genomes]
rs72750059	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750064	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750065	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750067	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750072	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750075	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750081	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750089	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750091	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750094	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750095	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750097	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750100	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750101	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751903	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751967	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751974	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751975	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751979	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92446000-92464200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92446800-92465000	Weak transcription	Fetal Stomach	stomach
3	chr15:92451800-92470200	Weak transcription	Small Intestine	intestine
4	chr15:92452000-92465200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:92453400-92466400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:92455800-92464200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:92457000-92465600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:92457200-92464800	Weak transcription	NHLF	lung
9	chr15:92457200-92467800	Weak transcription	Fetal Thymus	thymus
10	chr15:92457400-92470000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:92457600-92469600	Weak transcription	Hela-S3	cervix
12	chr15:92458400-92466400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:92459000-92467600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:92459400-92466200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:92459400-92467200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:92459400-92467800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:92459600-92466200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:92459600-92468800	Weak transcription	Colonic Mucosa	Colon
19	chr15:92459800-92465200	Weak transcription	Gastric	stomach
20	chr15:92460200-92464600	Weak transcription	NHEK	skin
21	chr15:92460600-92472000	Enhancers	Right Atrium	heart
22	chr15:92460800-92466800	Enhancers	Adipose Nuclei	Adipose
23	chr15:92461000-92464200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:92461000-92464600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:92461000-92464800	Enhancers	Right Ventricle	heart
26	chr15:92461000-92468000	Enhancers	Left Ventricle	heart
27	chr15:92461400-92466800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:92461400-92469400	Weak transcription	Osteobl	bone
29	chr15:92461600-92464600	Enhancers	Brain Cingulate Gyrus	brain
30	chr15:92461600-92465400	Weak transcription	Spleen	Spleen
31	chr15:92461600-92468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:92461800-92464200	Weak transcription	Primary T cells from cord blood	blood
33	chr15:92461800-92464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:92461800-92464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:92462000-92465600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:92462000-92469600	Enhancers	Brain Substantia Nigra	brain
37	chr15:92462200-92464800	Enhancers	Brain Angular Gyrus	brain
38	chr15:92462400-92464400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:92462600-92466000	Weak transcription	Psoas Muscle	Psoas
40	chr15:92462800-92464200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:92462800-92465000	Weak transcription	Ovary	ovary
42	chr15:92462800-92465200	Weak transcription	Pancreas	Pancrea
43	chr15:92462800-92466000	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr15:92462800-92469200	Weak transcription	Aorta	Aorta
45	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:92462800-92482600	Weak transcription	HMEC	breast
47	chr15:92463000-92464400	Enhancers	Brain Anterior Caudate	brain
48	chr15:92463000-92464800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr15:92463000-92471200	Enhancers	Brain Hippocampus Middle	brain
50	chr15:92463400-92465400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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