Variant report

Variant	rs55908621
Chromosome Location	chr15:92436664-92436665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92435577..92438094-chr15:92489816..92491916,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11853482	0.99[EUR][1000 genomes]
rs17596562	1.00[AFR][1000 genomes]
rs4078179	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638463	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55653850	1.00[AFR][1000 genomes]
rs55761412	1.00[AFR][1000 genomes]
rs55767000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	0.83[EUR][1000 genomes]
rs55772252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879752	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888073	1.00[AFR][1000 genomes]
rs55919613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55934923	1.00[AFR][1000 genomes]
rs56040702	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56079643	0.96[AMR][1000 genomes]
rs56079731	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56168257	1.00[AFR][1000 genomes]
rs56277940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56292826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358895	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388730	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56880057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60495981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742322	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750051	0.96[AMR][1000 genomes]
rs72750053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750072	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750089	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750091	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750094	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750095	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750097	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750100	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750101	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751903	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751904	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751905	0.83[EUR][1000 genomes]
rs72751967	0.83[EUR][1000 genomes]
rs72754094	1.00[AFR][1000 genomes]
rs72755606	1.00[AFR][1000 genomes]
rs72755608	1.00[AFR][1000 genomes]
rs72755613	1.00[AFR][1000 genomes]
rs72755617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
2	chr15:92426800-92437200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:92428400-92438200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:92428600-92442600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:92428800-92445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:92430200-92438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:92430800-92440800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:92431000-92440800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:92431400-92438000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:92431600-92437200	Weak transcription	Spleen	Spleen
11	chr15:92431600-92437400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:92431600-92437600	Weak transcription	Ovary	ovary
13	chr15:92431600-92437800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:92431600-92438000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:92432200-92437200	Weak transcription	Lung	lung
16	chr15:92432600-92441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:92432600-92447400	Weak transcription	Stomach Mucosa	stomach
18	chr15:92432800-92436800	Weak transcription	Fetal Stomach	stomach
19	chr15:92432800-92437200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:92433000-92446400	Weak transcription	Gastric	stomach
21	chr15:92433000-92458400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:92433200-92437000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:92434000-92438000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:92434400-92436800	Weak transcription	A549	lung
25	chr15:92434600-92437600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92435000-92437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:92435200-92437200	Weak transcription	NHEK	skin
28	chr15:92435200-92438800	Enhancers	Right Ventricle	heart
29	chr15:92435400-92437000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:92435400-92437200	Weak transcription	Esophagus	oesophagus
31	chr15:92435400-92440800	Weak transcription	Psoas Muscle	Psoas
32	chr15:92435600-92444800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr15:92435800-92436800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:92435800-92437800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:92435800-92440800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:92435800-92440800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:92436000-92437200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:92436000-92437200	Weak transcription	Left Ventricle	heart
39	chr15:92436000-92437200	Weak transcription	Right Atrium	heart
40	chr15:92436000-92437200	Weak transcription	HMEC	breast
41	chr15:92436000-92437600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:92436000-92437600	Weak transcription	Brain Angular Gyrus	brain
43	chr15:92436000-92437600	Weak transcription	Brain Anterior Caudate	brain
44	chr15:92436000-92438200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:92436200-92437200	Weak transcription	Brain Substantia Nigra	brain
46	chr15:92436200-92437800	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:92436400-92436800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
48	chr15:92436400-92436800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:92436400-92436800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:92436400-92438400	Enhancers	Fetal Heart	heart

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