Variant report

Variant	rs56880057
Chromosome Location	chr15:92420632-92420633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92419477..92421237-chr15:92429459..92431005,2	MCF-7	breast:
2	chr15:92420313..92422099-chr15:92424036..92426157,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17596562	1.00[AFR][1000 genomes]
rs28475884	0.86[EUR][1000 genomes]
rs4078179	0.85[AMR][1000 genomes]
rs4561447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638463	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55653850	1.00[AFR][1000 genomes]
rs55761412	1.00[AFR][1000 genomes]
rs55767000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55772252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55888073	1.00[AFR][1000 genomes]
rs55908621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55919613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	1.00[AFR][1000 genomes]
rs56079643	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56168257	1.00[AFR][1000 genomes]
rs56277940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56292826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60495981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742322	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72750051	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72750053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72750054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72750059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750072	0.96[AMR][1000 genomes]
rs72750075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750089	0.85[AMR][1000 genomes]
rs72750091	0.85[AMR][1000 genomes]
rs72750094	0.85[AMR][1000 genomes]
rs72750095	0.85[AMR][1000 genomes]
rs72750097	0.85[AMR][1000 genomes]
rs72750100	0.85[AMR][1000 genomes]
rs72750101	0.85[AMR][1000 genomes]
rs72754094	1.00[AFR][1000 genomes]
rs72755606	1.00[AFR][1000 genomes]
rs72755608	1.00[AFR][1000 genomes]
rs72755613	1.00[AFR][1000 genomes]
rs72755617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92409600-92430800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
4	chr15:92411200-92421800	Weak transcription	Fetal Brain Female	brain
5	chr15:92411200-92430600	Weak transcription	Colonic Mucosa	Colon
6	chr15:92411200-92431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:92411600-92430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:92411600-92430600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:92412000-92421600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:92412000-92425200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:92412000-92425800	Weak transcription	Lung	lung
12	chr15:92412000-92426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:92413000-92422200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:92413400-92421800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:92414400-92421200	Weak transcription	Fetal Brain Male	brain
16	chr15:92414800-92424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:92414800-92424200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:92414800-92424200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:92414800-92425200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:92414800-92429600	Weak transcription	Ovary	ovary
21	chr15:92415000-92424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:92415000-92424200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:92415000-92432600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:92416200-92421400	Weak transcription	Pancreas	Pancrea
25	chr15:92416200-92428400	Weak transcription	Esophagus	oesophagus
26	chr15:92416400-92421600	Weak transcription	Brain Angular Gyrus	brain
27	chr15:92416400-92428000	Weak transcription	Fetal Stomach	stomach
28	chr15:92416600-92424000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:92416600-92431000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:92416800-92430600	Weak transcription	HMEC	breast
31	chr15:92416800-92431000	Weak transcription	NHEK	skin
32	chr15:92417000-92421400	Weak transcription	Brain Substantia Nigra	brain
33	chr15:92417600-92421600	Enhancers	Right Atrium	heart
34	chr15:92418000-92420800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:92418000-92435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:92418200-92425200	Enhancers	Fetal Heart	heart
37	chr15:92418400-92422200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:92418400-92424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:92418400-92428200	Weak transcription	Spleen	Spleen
40	chr15:92418400-92430400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:92418400-92435800	Weak transcription	Primary T cells from cord blood	blood
42	chr15:92418600-92423000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:92418600-92423600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:92418600-92424200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:92418800-92421600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:92418800-92424200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:92419000-92424200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:92419000-92424400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:92419000-92426200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:92419000-92428200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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